Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20856
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    94   1e-20
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.5  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   5.9  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   7.9  

>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 44/68 (64%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 RKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDG 433
           RKKVWINQGDIIL+ LR++QD K DVILKYT DEAR LK  G  PET +INET  +  +G
Sbjct: 66  RKKVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEG 125

Query: 434 LDE-DIEF 454
            D+ D EF
Sbjct: 126 EDDLDFEF 133



 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 33/43 (76%), Positives = 37/43 (86%)
 Frame = +3

Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
           L + E+GQ YAQVTKMLGNGR+EA CFDG+KRL HIRGKL KK
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKK 68


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 227 FDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYD 48
           FDA   H  +  +   LCD   L  V  +    F++ I+       FS   + F++ L+D
Sbjct: 418 FDAALTHRDRECLIHDLCDNDQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWD 477


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -1

Query: 170 LGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYDFYY---KHKQL 24
           + + +  +  + + FF F F  S   +FS F+F+F  + ++F++   +HK L
Sbjct: 93  IAIFIHPYDSNVVPFFCFFFYFS---LFSFFSFLFTSLHFNFFFRLCRHKHL 141


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 97  GEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACVTSEG 249
           G E+  +  +  +W    ++ S   S  CS+ A W   +L+++  CV + G
Sbjct: 220 GGEKWNVAAECDAWQANNSELS---SSICSISANWSTLSLLSTEGCVYAFG 267


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 201 EAMCFDGIKRLCHIRG 248
           +A C +G + LCH+ G
Sbjct: 623 DAQCLEGFRALCHLEG 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,410
Number of Sequences: 5004
Number of extensions: 44277
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)