Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20856
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0256 + 13528331-13528765                                         85   4e-17
02_02_0566 + 11567415-11567843                                         85   7e-17
02_05_1082 - 33976038-33978035                                         32   0.38 
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898...    29   4.6  
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818...    28   6.1  
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639...    28   8.1  

>06_02_0256 + 13528331-13528765
          Length = 144

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 42/62 (67%), Positives = 48/62 (77%)
 Frame = +2

Query: 257 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDGL 436
           KKVWI  GDIIL+GLRDYQD KADVILKY  DEAR LK YG  P+T+R+NE V   VDG 
Sbjct: 67  KKVWIAAGDIILVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNEGV--DVDGP 124

Query: 437 DE 442
           ++
Sbjct: 125 ED 126



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +3

Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
           LVFKEDGQEYAQVT+MLGNGR EA+C DG KRLCHIRGK+ KK
Sbjct: 26  LVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKK 68


>02_02_0566 + 11567415-11567843
          Length = 142

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 41/63 (65%), Positives = 45/63 (71%)
 Frame = +2

Query: 257 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDGL 436
           KKVWI  GDI+L+GLRDYQD KADVILKY  DEAR LK YG  P+ VR+NE VV   D  
Sbjct: 67  KKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGEIPDHVRLNEGVVDEDDAA 126

Query: 437 DED 445
             D
Sbjct: 127 AHD 129



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 35/43 (81%), Positives = 37/43 (86%)
 Frame = +3

Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
           LVFKEDGQEYAQV +MLGNGR EA C DG KRLCHIRGK+ KK
Sbjct: 26  LVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCHIRGKMHKK 68


>02_05_1082 - 33976038-33978035
          Length = 665

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 335 LKYTPDEARNLKTYGGFPETVRINETVV 418
           +K+ PD+ ++LK YG +P +++ + T V
Sbjct: 229 IKHNPDDVKSLKMYGKYPRSIKCDPTTV 256


>07_03_1604 -
           28089032-28089079,28089161-28089371,28089484-28089853,
           28090034-28090199
          Length = 264

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 179 LCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFS 84
           +  L ++L VF+  Q   F+F  V SSPP+FS
Sbjct: 1   MAPLLLILLVFMPCQTMLFTFDRVTSSPPLFS 32


>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
            26481936-26482081,26482185-26482341,26482489-26482547,
            26482787-26482946,26483020-26483169,26483279-26483415,
            26483518-26483664,26483733-26483834,26483917-26483974,
            26484084-26484185,26484322-26484379,26484717-26484775,
            26486488-26486525,26486688-26486814,26486900-26487067,
            26487879-26488010,26488089-26488198,26488273-26488333,
            26488761-26488938,26489041-26489246,26489431-26489550,
            26489631-26489729,26489968-26490156,26490291-26490430,
            26491149-26491316,26491438-26491605,26491764-26491931,
            26492250-26492417,26492533-26492700,26492853-26493020,
            26493118-26493285,26493471-26493638,26493756-26493920,
            26494679-26494850,26495012-26495175,26495296-26495405,
            26495481-26495596,26495686-26495766,26495849-26496034,
            26496203-26496547,26496637-26496777,26496869-26496916,
            26497162-26497242,26497350-26497406,26497495-26497575,
            26497675-26497757,26497842-26497968
          Length = 2159

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 194  PLGGHVL*----WHQTPVSHPRETRKKVWINQGDII-LIGLRDYQ 313
            P  GH+L     + +  ++ P ETR  + +NQG I+ LI  +DY+
Sbjct: 1719 PENGHILNGNVAYAEKSLTGPAETRPSMVVNQGSILNLINQKDYE 1763


>04_04_0979 -
           29862280-29862444,29862718-29862999,29863831-29863929,
           29864037-29864366
          Length = 291

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 79  KEEKIGGEERTKMKLKNVSWS 141
           +EE+ GGE+R K+ + N+ WS
Sbjct: 70  EEEEEGGEKRRKLYVANIPWS 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,050,606
Number of Sequences: 37544
Number of extensions: 261359
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)