Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20856
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05) 74 1e-13
SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 29 4.7
SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7) 28 6.2
SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2) 28 6.2
SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7) 28 6.2
SB_13854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_13429| Best HMM Match : Vicilin_N (HMM E-Value=0.13) 28 6.2
>SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 97.1 bits (231), Expect = 1e-20
Identities = 43/63 (68%), Positives = 50/63 (79%)
Frame = +2
Query: 254 RKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDG 433
RKKVWIN GDIIL+GLRDYQD KADVIL+Y PDEARNLK YG PE +IN+T ++ +
Sbjct: 136 RKKVWINTGDIILLGLRDYQDTKADVILRYNPDEARNLKAYGELPENAKINDTNMFGPEE 195
Query: 434 LDE 442
DE
Sbjct: 196 EDE 198
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = +3
Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
L+ G+EYAQV KMLGNGRLEA+CFDG+KRLCHIRGKL KK
Sbjct: 96 LINDRQGEEYAQVVKMLGNGRLEALCFDGMKRLCHIRGKLRKK 138
>SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05)
Length = 72
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +2
Query: 272 NQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPE 391
N+GDIIL+GLRDYQD KADVIL+Y PDEARNLK YG PE
Sbjct: 31 NKGDIILLGLRDYQDTKADVILRYNPDEARNLKAYGELPE 70
>SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 67 KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 192
+ KV++EK GEE K ++N+ ++ + ++ KS+R M
Sbjct: 80 RKKVEQEKAKGEEIRKRAMENLEDMKKREESASKKSRRSGAM 121
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 58 TCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACV 237
T R V E+ I RT++++ + + D+ P C V+ A PC L C
Sbjct: 276 TARVYGVCEDLIRNRRRTRVQM--IFGGGAEEDRIVPLINGCEVLVATPPCFLRMLKRCY 333
Query: 238 TS 243
TS
Sbjct: 334 TS 335
>SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7)
Length = 215
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 67 KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 192
K KV++EK GEE K ++ + + ++ + ++ KS+R M
Sbjct: 97 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 138
>SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2)
Length = 148
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 67 KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 192
K KV++EK GEE K ++ + + ++ + ++ KS+R M
Sbjct: 30 KKKVEQEKARGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 71
>SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7)
Length = 123
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 67 KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 192
K KV++EK GEE K ++ + + ++ + ++ KS+R M
Sbjct: 5 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 46
>SB_13854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 67 KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 192
K KV++EK GEE K ++ + + ++ + ++ KS+R M
Sbjct: 316 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 357
>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 210 TWPPSGHYRASL*LGRTLVRLP*RPTH 130
TWP Y+A LG T + LP P+H
Sbjct: 106 TWPSPADYQARPTLGNTHITLPQSPSH 132
>SB_13429| Best HMM Match : Vicilin_N (HMM E-Value=0.13)
Length = 323
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 67 KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 192
K KV++EK GEE K ++ + + ++ + ++ KS+R M
Sbjct: 119 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,878,231
Number of Sequences: 59808
Number of extensions: 309757
Number of successful extensions: 673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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