Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20856
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...    87   9e-18
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U97005-8|AAB52286.2|  154|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    28   7.3  

>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 42/60 (70%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
 Frame = +2

Query: 233 VSHPR-ETRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINE 409
           V H R + RKKVWIN GDIIL+GLRDYQD K DVILKYTPDEAR LK  G  PE  ++NE
Sbjct: 58  VCHIRGKLRKKVWINVGDIILVGLRDYQDDKGDVILKYTPDEARRLKNEGLIPENAKLNE 117



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 30/43 (69%), Positives = 36/43 (83%)
 Frame = +3

Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
           L  KE+GQEY QV+KMLGNGR++  CFDG +R+CHIRGKL KK
Sbjct: 26  LDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKK 68


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 49  SYKTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTP 168
           S KT RKTK+++ KI      K ++ +  WS+ ++ K  P
Sbjct: 102 SEKTPRKTKLRDGKIIDSNDQKQEVSSRKWSVGRSKKRPP 141


>Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical
           protein C31A11.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 486 MMCEYV--ILA-LFMIFAVSLCKIPSVIKHDFNFYLYLLVIIQASKLICK 626
           ++C++V  ILA LFM++ ++L       ++D N     L+++    ++CK
Sbjct: 10  VVCQFVFCILAILFMVYDIALLMATYAYRNDQNIPFAYLIVMNVCGVLCK 59


>U97005-8|AAB52286.2|  154|Caenorhabditis elegans Hypothetical
           protein F19F10.8 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 MCEYVILALFMIFAVSLCKIPSVI 560
           MC +++  LF++F  S C +P +I
Sbjct: 13  MCMFLLSILFVLFKASYCTVPQMI 36


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 426 WMD*MKILNLEMKSVQRMKLMMCEYVILALFMIFAVSLCKIPSVIKHDFNFYLYLLVII 602
           W       N  M S  R+ L+   Y +L    I+   +    S+  H F++YL +  II
Sbjct: 80  WFSEASEFNFHMLS-SRISLVAASYAVLLTHFIYRYLVIHNSSLATHKFHWYLTISAII 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,472,037
Number of Sequences: 27780
Number of extensions: 244086
Number of successful extensions: 665
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)