Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20856
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35680.2 68418.m04264 eukaryotic translation initiation facto...    88   6e-18
At5g35680.1 68418.m04263 eukaryotic translation initiation facto...    88   6e-18
At2g04520.1 68415.m00458 eukaryotic translation initiation facto...    85   3e-17
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    29   2.9  
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof...    28   5.1  
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa...    28   5.1  
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c...    28   6.8  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    28   6.8  

>At5g35680.2 68418.m04264 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 42/64 (65%), Positives = 48/64 (75%)
 Frame = +2

Query: 257 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDGL 436
           KKVWI  GDIIL+GLRDYQD KADVILKY  DEAR LK YG  PE  R+NE +V  +D  
Sbjct: 67  KKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD- 125

Query: 437 DEDI 448
           D+D+
Sbjct: 126 DDDV 129



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +3

Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KK
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKK 68


>At5g35680.1 68418.m04263 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 42/64 (65%), Positives = 48/64 (75%)
 Frame = +2

Query: 257 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDGL 436
           KKVWI  GDIIL+GLRDYQD KADVILKY  DEAR LK YG  PE  R+NE +V  +D  
Sbjct: 67  KKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD- 125

Query: 437 DEDI 448
           D+D+
Sbjct: 126 DDDV 129



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +3

Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KK
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKK 68


>At2g04520.1 68415.m00458 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 39/63 (61%), Positives = 47/63 (74%)
 Frame = +2

Query: 257 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDGL 436
           KKVWI  GDI+L+GLRDYQD KADVILKY  DEAR LK YG  PE  R+NE +V  ++  
Sbjct: 67  KKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDD 126

Query: 437 DED 445
           D++
Sbjct: 127 DDN 129



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/43 (81%), Positives = 38/43 (88%)
 Frame = +3

Query: 135 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLEKK 263
           L+FKEDGQEYAQV +MLGNGR EAMC DG KRLCHIRGK+ KK
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 68


>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/68 (19%), Positives = 38/68 (55%)
 Frame = +2

Query: 248 ETRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSV 427
           +TRK    N+ +++LIG  +Y  +++ V+  ++ ++    +  GG    +++ + + +  
Sbjct: 220 DTRKAWPNNKSNLVLIGRYNYFRSQSRVLKPHSEEKTDESENNGGLANVLKLLKGIHHKF 279

Query: 428 DGLDEDIE 451
             ++E++E
Sbjct: 280 FKVEEEVE 287


>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 735

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 681 KCEQMKHINNXIRFQLVFFYKLILKPG 601
           KC +MKH +N ++  L++F   ++K G
Sbjct: 338 KCSKMKHGSNRLKLVLLYFLVKVVKAG 364


>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase II isoform (GI:15418718) [Mus musculus];
           contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
           repeats and Pfam PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 1101

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 350 DEARNLKTYGGFPETVRINETVVYSVDGL 436
           D  R   T GGF +  R  E +V SVDG+
Sbjct: 390 DAVRRAATKGGFCDDSRKTEAIVISVDGM 418


>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 680

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 302 RDYQDAKADVILKYTPDEARNLKTYGGFPETVRINETVVYSVDGLDED 445
           RDY+   AD ILK   D+    K Y    ++  +    V+ +    E+
Sbjct: 207 RDYESPNADAILKLMRDQIIMAKAYANIAKSKNVTNLYVFLMQQCGEN 254


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 143 KDQLTFFSFIFVLSSPPIFSSFTFVFRHVL 54
           KD   F +F+F++S+ P FS F    R +L
Sbjct: 562 KDSQVFNTFLFIVSAFPFFSRFLQCMRRML 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,605,545
Number of Sequences: 28952
Number of extensions: 225953
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)