Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20855
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   0.92 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.92 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.1  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 195 PQGIRCQKCLEFGHWSYECKANA 263
           P G  C +C + GHW   C  NA
Sbjct: 180 PPGYICYRCGQKGHWIQACPTNA 202


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 628  LYNSYFQQTYTSKFSFSYFQQTYTSKFLFSYFLT 729
            +Y  YF +T+     F +F++T+T+++ +   +T
Sbjct: 3454 IYYDYFYKTFERYCDFWFFRRTFTTQYAYMIIMT 3487


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 201 GIRCQKCLEFGHWSYECK 254
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 198 QGIRCQKCLEFGHWSYECKANAR 266
           QG  C KC   GH + +C+ N +
Sbjct: 81  QGAECYKCGRVGHIARDCRTNGQ 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,604
Number of Sequences: 5004
Number of extensions: 45686
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)