Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20855
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.74 
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)               29   4.0  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  28   9.1  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 192 FPQGIRCQKCLEFGHWSYECKAN 260
           +P   RC +C E GH SYEC  N
Sbjct: 101 YPDKSRCYECGEGGHLSYECPKN 123


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 658  TSKFSFSYFQQTYTSKFLFSYFLTNFIY 741
            TS+ +F+YF+QT+ S  +FS  L   +Y
Sbjct: 1310 TSEKTFNYFKQTFRSSMVFSMSLQQNVY 1337


>SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)
          Length = 947

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 208 DARSAWSLDTGAMSARQTQDPSSSFTYTNHA*ESESQR-RRSMQQWQLQDTQQEKA 372
           D +    + TG+ SAR+ Q PSSS  Y  ++ + +SQ  +RS     L+ T  E+A
Sbjct: 314 DEKPQKKISTGSGSAREVQ-PSSSLGYDVNSSKDKSQGIKRSSSASSLKHTTSEEA 368


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 204 IRCQKCLEFGHWSYEC--KANARS*FVLHVHE 293
           +RC KC + GH++  C  K N R   V+  HE
Sbjct: 233 VRCDKCTKVGHFAAVCRSKPNTRVSQVVDAHE 264


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 276 RTRILRLPCTHSSSVQTPSTS 214
           R R L LPCT +SS  TP++S
Sbjct: 676 RARSLSLPCTAASSPSTPASS 696


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 622 IFLYNSYFQQTYTSKFSFSY-FQQTYTSKFLFSY-FLTNFIY 741
           I++Y   +  TYT  ++++Y +  TYT  +++ Y ++  ++Y
Sbjct: 25  IYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVY 66


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 207 RCQKCLEFGHWSYECKA 257
           RC +CL   H SYECK+
Sbjct: 357 RCFRCLRKNHRSYECKS 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,411,445
Number of Sequences: 59808
Number of extensions: 318483
Number of successful extensions: 1285
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)