Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20855
(741 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022443-1|AAH22443.1| 192|Homo sapiens ZCCHC10 protein protein. 45 3e-04
BC005211-1|AAH05211.1| 170|Homo sapiens zinc finger, CCHC domai... 45 3e-04
AK000101-1|BAA90946.1| 170|Homo sapiens protein ( Homo sapiens ... 45 3e-04
Z98884-5|CAI21436.1| 1201|Homo sapiens period homolog 3 (Drosoph... 31 5.7
Z98884-4|CAI21435.1| 1210|Homo sapiens period homolog 3 (Drosoph... 31 5.7
EF015893-1|ABM64204.1| 1201|Homo sapiens period 3 protein. 31 5.7
BC146781-1|AAI46782.1| 1210|Homo sapiens PER3 protein protein. 31 5.7
AY493418-1|AAS72879.1| 1201|Homo sapiens growth-inhibiting prote... 31 5.7
AL157954-1|CAB76084.1| 1201|Homo sapiens hypothetical protein pr... 31 5.7
AB047686-1|BAB32925.2| 1233|Homo sapiens period (Drosophila) hom... 31 5.7
>BC022443-1|AAH22443.1| 192|Homo sapiens ZCCHC10 protein protein.
Length = 192
Score = 44.8 bits (101), Expect = 3e-04
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +3
Query: 198 QGIRCQKCLEFGHWSYEC 251
Q +RCQKCLEFGHW+YEC
Sbjct: 41 QHVRCQKCLEFGHWTYEC 58
Score = 35.1 bits (77), Expect = 0.27
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 224 GVWTLEL*VQGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKKKR 373
G WT E GKRK L RPSRT + K LK KE Q S G + K K+
Sbjct: 52 GHWTYEC--TGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKAKK 102
>BC005211-1|AAH05211.1| 170|Homo sapiens zinc finger, CCHC domain
containing 10 protein.
Length = 170
Score = 44.8 bits (101), Expect = 3e-04
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +3
Query: 198 QGIRCQKCLEFGHWSYEC 251
Q +RCQKCLEFGHW+YEC
Sbjct: 19 QHVRCQKCLEFGHWTYEC 36
Score = 35.1 bits (77), Expect = 0.27
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 224 GVWTLEL*VQGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKKKR 373
G WT E GKRK L RPSRT + K LK KE Q S G + K K+
Sbjct: 30 GHWTYEC--TGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKAKK 80
>AK000101-1|BAA90946.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ20094 fis, clone COL04320. ).
Length = 170
Score = 44.8 bits (101), Expect = 3e-04
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +3
Query: 198 QGIRCQKCLEFGHWSYEC 251
Q +RCQKCLEFGHW+YEC
Sbjct: 19 QHVRCQKCLEFGHWTYEC 36
Score = 35.1 bits (77), Expect = 0.27
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 224 GVWTLEL*VQGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKKKR 373
G WT E GKRK L RPSRT + K LK KE Q S G + K K+
Sbjct: 30 GHWTYEC--TGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKAKK 80
>Z98884-5|CAI21436.1| 1201|Homo sapiens period homolog 3
(Drosophila) protein.
Length = 1201
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 631 YNSYFQQTYTSKFSFSYFQQTYTSK 705
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>Z98884-4|CAI21435.1| 1210|Homo sapiens period homolog 3
(Drosophila) protein.
Length = 1210
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 631 YNSYFQQTYTSKFSFSYFQQTYTSK 705
Y+SY QQ SK +SYFQ TSK
Sbjct: 711 YSSYLQQESRSKAKYSYFQGDSTSK 735
>EF015893-1|ABM64204.1| 1201|Homo sapiens period 3 protein.
Length = 1201
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 631 YNSYFQQTYTSKFSFSYFQQTYTSK 705
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>BC146781-1|AAI46782.1| 1210|Homo sapiens PER3 protein protein.
Length = 1210
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 631 YNSYFQQTYTSKFSFSYFQQTYTSK 705
Y+SY QQ SK +SYFQ TSK
Sbjct: 711 YSSYLQQESRSKAKYSYFQGDSTSK 735
>AY493418-1|AAS72879.1| 1201|Homo sapiens growth-inhibiting protein
13 protein.
Length = 1201
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 631 YNSYFQQTYTSKFSFSYFQQTYTSK 705
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>AL157954-1|CAB76084.1| 1201|Homo sapiens hypothetical protein
protein.
Length = 1201
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 631 YNSYFQQTYTSKFSFSYFQQTYTSK 705
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>AB047686-1|BAB32925.2| 1233|Homo sapiens period (Drosophila)
homolog 3 hPER3 protein.
Length = 1233
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 631 YNSYFQQTYTSKFSFSYFQQTYTSK 705
Y+SY QQ SK +SYFQ TSK
Sbjct: 734 YSSYLQQESRSKAKYSYFQGDSTSK 758
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,641,509
Number of Sequences: 237096
Number of extensions: 1610797
Number of successful extensions: 3636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3632
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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