Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20855
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    31   0.65 
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    31   0.65 
U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine rece...    30   2.0  
Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine rece...    28   8.0  

>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 CQKCLEFGHWSYEC 251
           C++C E GHW YEC
Sbjct: 667 CRRCAEEGHWGYEC 680


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 CQKCLEFGHWSYEC 251
           C++C E GHW YEC
Sbjct: 667 CRRCAEEGHWGYEC 680


>U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 30 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 616 SIIFLYNSYFQQTYTSKFSFSYFQQTYTSKFLFSYFLTNFIY 741
           S IFL    F   +TSK S+ Y Q   +  F+FS   + F Y
Sbjct: 233 SFIFLGVITFASMFTSKISYEYAQYAISVIFMFSPICSPFSY 274


>Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical
           protein T05G5.8 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 300 CMIRVREGRTRILRLPCTHSSSVQTPSTSGILCLEEKQQPELLAFSSQPDA 148
           C  ++R G  +  R   TH+  V  PS++ +  L +K   E    SS+PDA
Sbjct: 385 CASKIRSGEEKPSRESSTHA--VPFPSSADMFLLLKKVITESSKLSSEPDA 433


>U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 31 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 616 SIIFLYNSYFQQTYTSKFSFSYFQQTYTSKFLFSYFLTNFIY 741
           S IFL    F   +T K  + Y Q   +  F+FS  ++ F Y
Sbjct: 231 SFIFLGVITFASMFTGKIGYEYAQYAISVIFMFSPIISPFSY 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,532,035
Number of Sequences: 27780
Number of extensions: 256539
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)