Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20855
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    37   0.016
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    29   4.3  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   7.5  
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    28   7.5  
At2g07680.1 68415.m00992 ABC transporter family protein                28   7.5  
At4g29920.1 68417.m04257 heat shock protein-related contains sim...    27   9.9  
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    27   9.9  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 207 RCQKCLEFGHWSYECK 254
           +CQKC + GHW+YECK
Sbjct: 99  QCQKCFQAGHWTYECK 114


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 134 QSHIQNLKGKINKIRG*LNICLELYCSNCNRSSIKIYRI 18
           ++H+ N +GK +K       C E YC  C    +K Y I
Sbjct: 387 ENHVSNSRGKFHKS------CYERYCYVCKEKKMKTYNI 419


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 210 CQKCLEFGHWSYECKANARS 269
           C KC + GHWS +C + A++
Sbjct: 342 CYKCGKAGHWSRDCTSPAQT 361


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 207 RCQKCLEFGHWSYECKAN 260
           RC +C + GH SYEC  N
Sbjct: 153 RCYECGDEGHLSYECPKN 170


>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 584 YSQMSFELDASLLFSCIILIFNKLILP-NFHFLIFNKLI 697
           ++ M  +LDA+ +F+C+ L FN LI P N    + N LI
Sbjct: 276 FALMGHQLDAATVFTCLAL-FNSLISPLNSFPWVINGLI 313


>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 248 VQGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSCKIPNKKK 370
           V  KRK     + T I  KN + +E+   SN +C I N KK
Sbjct: 806 VNNKRKPEYDAAPTMIKKKNPRIEEDDDESNVACDISNIKK 846


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 150 HQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYEC 251
           H A  +++      F QG  C  C   GH++ +C
Sbjct: 37  HDAPSRREREPRRAFSQGNLCNNCKRPGHFARDC 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,619
Number of Sequences: 28952
Number of extensions: 225985
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)