Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20854
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CF375 Cluster: PAS domain S-box family protein;...    33   5.6  
UniRef50_O66708 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  

>UniRef50_UPI00006CF375 Cluster: PAS domain S-box family protein;
           n=1; Tetrahymena thermophila SB210|Rep: PAS domain S-box
           family protein - Tetrahymena thermophila SB210
          Length = 1577

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 509 STFFIFVPFNNKLCKV*TRKVN*SCLWIVWNLFLCLIVFSLTVDII 372
           S  F  +P+ +K  +  T  ++ S LWIVW  F+C I+ S ++ I+
Sbjct: 231 SNRFFSLPYYSKSIQNFTLIIDSSLLWIVWISFVCAIIDSGSISIL 276


>UniRef50_O66708 Cluster: Putative uncharacterized protein; n=1;
           Aquifex aeolicus|Rep: Putative uncharacterized protein -
           Aquifex aeolicus
          Length = 621

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 579 FTYLAEAVLYTELTKS*FKNQIQKYVLHFCTVQQQV 472
           +TY+A+ +   E  K+ FK+  + Y  +FC +Q++V
Sbjct: 97  YTYIADKIKIPESVKATFKSHNKHYFTYFCEIQEEV 132


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,577,996
Number of Sequences: 1657284
Number of extensions: 8567262
Number of successful extensions: 16919
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16917
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)