Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20854
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   0.72 
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.9  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   8.9  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 130 IGVTSEKRSEIFKLMSINLCSGAIALGSNKRGG 228
           IG+T  ++ EIF+++SI L  G I     + GG
Sbjct: 287 IGITEPEQDEIFRMLSIILWLGNIQFQEGQDGG 319


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 117 SR*SRYQ*KVKNNTAIFIKVNSVLSMI 37
           SR  R++  ++NNT IF+ ++  LSM+
Sbjct: 61  SRSLRHRLSLRNNTPIFMPIDFTLSMV 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 212  DPSAMAPEHKFMDISLKISDLFSEVT-PINNLVVGSRDINRKLKTT 78
            D   +  E++ +DIS K S+LF++++  + N+V+  R+ +   + T
Sbjct: 1907 DTMDLIGEYEQIDISRKASELFTDLSQQLLNIVIKYRNFDNIFRET 1952


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 73  CGVVFNFLLISRLPTTKLFIGVTSEKRSEIFKLMSINLCSGAIAL 207
           CG+V   +L+ RLP    FI    +K +    +M   L  GA +L
Sbjct: 217 CGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,436
Number of Sequences: 5004
Number of extensions: 41046
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)