Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20854
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    29   3.6  

>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 239  ICSRPPRLFDPSAMAPEHKFMDISLKISDLFSEVTPINNLVVGSRDINRKLKTT 78
            +   PP   DP A   + +F D + KI+D  +E+  +N  V+    + + LK T
Sbjct: 1346 LAEAPPGEGDPCAARLKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLKNT 1399


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 239  ICSRPPRLFDPSAMAPEHKFMDISLKISDLFSEVTPINNLVVGSRDINRKLKTT 78
            +   PP   DP A   + +F D + KI+D  +E+  +N  V+    + + LK T
Sbjct: 1346 LAEAPPGEGDPCAARLKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLKNT 1399


>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 340 INFTFSDFYYNCK-RTAKTLSLRVKQGFLKNLNF-EFVHV 227
           IN+  + +YYNC  R   T SL  +    +N+ F +F H+
Sbjct: 162 INYKLNRYYYNCSLRKLHTYSLTERYQISENIQFAKFFHI 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,952,343
Number of Sequences: 27780
Number of extensions: 218297
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)