BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20854 (624 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72330.1 68414.m08367 alanine aminotransferase, putative simi... 30 1.4 At1g17290.1 68414.m02107 alanine aminotransferase, putative simi... 30 1.4 >At1g72330.1 68414.m08367 alanine aminotransferase, putative similar to alanine aminotransferase 2 SP|P34106 from Panicum miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884 from Oryza sativa Length = 540 Score = 29.9 bits (64), Expect = 1.4 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = +1 Query: 133 GVTSEKRSEIFKLMSINLCS 192 G TS+ R +I+K+ S+NLCS Sbjct: 374 GFTSDVREQIYKMASVNLCS 393 >At1g17290.1 68414.m02107 alanine aminotransferase, putative similar to alanine aminotransferase from Panicum miliaceum [SP|P34106], GB:AAC62456 GI:3694807 from [Zea mays], GI:4730884 from Oryza sativa Length = 543 Score = 29.9 bits (64), Expect = 1.4 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = +1 Query: 133 GVTSEKRSEIFKLMSINLCS 192 G TS+ R +I+K+ S+NLCS Sbjct: 377 GFTSDVREQIYKMASVNLCS 396 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,739,096 Number of Sequences: 28952 Number of extensions: 185572 Number of successful extensions: 354 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 354 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1265787216 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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