Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20853
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    31   0.22 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    28   1.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.7  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   3.6  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   4.7  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   8.3  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   8.3  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   8.3  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +2

Query: 29  RSIQELMAESGRQSAEGDASLGLQMSFDTTQKTEDSDMKLDFGFDSD-----LGQLSEDK 193
           ++I E +A+   +++ GD ++ + M FD +   ++S+   +   D+D     + QLS   
Sbjct: 81  KTISEFLAQKIWKTSNGDLNVAVDMYFDESFNIKNSNPDSESQKDTDASLTQMDQLSNTV 140

Query: 194 SAKSLG*PRGVHMSTSNTIS 253
           S K L   R  +    N +S
Sbjct: 141 SVKDLSINRNTNKKALNAVS 160


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 618 EYQENHQIDLYSDPRKLRKVHPAGEAVEKILT 523
           E++   +ID+  DPR LR++  A E  ++ L+
Sbjct: 246 EFKRKQKIDISDDPRALRRLRSACERAKRALS 277


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 543 AVEKILTIAVMSKQHGRRR 487
           A+E+ LTI +M  QHG RR
Sbjct: 341 AIERALTIRIMQTQHGARR 359


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 251  SLWQLILI*KSLVLRRSGRCLLLRKIRRNYNLLDLKKPIQK 373
            S+W ++    S+ +  SG  L + KIR+ ++ L  + P+Q+
Sbjct: 1372 SIWNVV----SITINNSGEDLFISKIRKGHSPLIFRLPLQR 1408


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = -2

Query: 618 EYQENHQIDLYSDPRKLRKVHPAGEAVEKILT 523
           E++E ++ID+ S+P+   ++  A E ++K+L+
Sbjct: 250 EFKEKYKIDVLSNPKATFRLATAVERLKKVLS 281


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 457 QGGYGGLSVPSPPAMLFTHH 516
           +GGYGG   P P  + FT H
Sbjct: 120 KGGYGGFYDPRPGCLKFTTH 139


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 642 GPLNRRHMEY-QENHQIDLYSDP--RKLRKVHPAGEAVEKILTIAVMS 508
           G L  R+ +Y +E+H+ DL       KLR +   G+A E + TI  MS
Sbjct: 341 GDLLARYWKYFEESHKFDLNLQVYHEKLRNLVQQGQAAECLNTIKRMS 388


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 422 PHRLNITTTWAIREGTVGYQFRRRLPCCLLITAIVRIFSTASP 550
           P R+NI    A  E  +    RRRL    ++  I  +FST  P
Sbjct: 257 PTRVNIADISATSEDPLSRATRRRLRLLGIMEGIPVVFSTEKP 299


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 585 SRGQFGGFPG---TPYGAGSAAPYNYQPPPDMFSSIPSQ 692
           +R + GG PG     +G G A P+  +  P    S PSQ
Sbjct: 161 TRTRGGGMPGGFANMFGGGGAGPHARRSHPSFGGSRPSQ 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,264
Number of Sequences: 5004
Number of extensions: 60566
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)