Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20853
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0381 - 2764331-2764342,2768966-2769907 33 0.30
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 31 0.93
02_05_0325 - 27951570-27952808 31 1.2
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148... 30 1.6
01_06_1682 - 39130696-39131705,39132355-39132583 30 1.6
01_06_1737 - 39559321-39559461,39559761-39559817,39559919-395601... 29 2.8
10_07_0134 + 13289641-13290216,13290435-13290914 29 3.7
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 29 4.9
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 29 4.9
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 29 4.9
05_02_0160 - 7194699-7195019,7195207-7195368,7195806-7195953,719... 29 4.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.9
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 28 8.6
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 367 TESAPPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGGLSVPSPPAML 504
++ APP+ + L PPP N GG GGL + P++L
Sbjct: 46 SKPAPPSSSAAEAASDLPPPPPPPPNQPSAGGGGGGLEASAKPSLL 91
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 609 PGTPYGAGSAAPYNYQPPP 665
PG PYGA PYNY PPP
Sbjct: 105 PGPPYGA---VPYNYGPPP 120
>02_05_0325 - 27951570-27952808
Length = 412
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1
Query: 415 LQSPPPQHYNHVGYQGGYGGLSVPSPPAMLFTH 513
L P HY G GG G PSPPA L+ H
Sbjct: 216 LPMPLTSHYAPWGIGGGGGFFVQPSPPATLYEH 248
>06_03_0293 +
19212963-19212965,19213900-19214235,19214658-19214870,
19216134-19216408,19216504-19216615,19217181-19217417,
19217445-19217462
Length = 397
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 194 IYLLKVVPNLNQSQNQVSCQNLLFFVLCQMTFVSLTTRPL-LQI 66
+ +L V+PNL S+ + L+F VLCQ + RPL LQI
Sbjct: 114 VVILVVLPNLRSSEVAKAKNILMFIVLCQYVPRLIRIRPLYLQI 157
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 609 PGTPYGAGSAAP--YNYQPPPDMFSSIPSQYR 698
P PYG S P Y PPP F+S P QY+
Sbjct: 259 PPPPYGYNSPIPPTNKYLPPPYYFNSPPPQYQ 290
>01_06_1737 -
39559321-39559461,39559761-39559817,39559919-39560117,
39560217-39560344,39560443-39560548,39560721-39560800,
39561189-39561286,39561368-39561481,39561567-39561707,
39561801-39561885,39562761-39563099
Length = 495
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 600 GGFPGTPYGAGS-AAPYN--YQPPPDMFSSIPSQYRMAAGG 713
GG+ G P G AAPY QPPP M S +Q AGG
Sbjct: 51 GGYYGAPAPQGGYAAPYPAYQQPPPPMPSPAATQPPARAGG 91
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 379 PPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGG 474
PP++ P + +PPP Y G GG GG
Sbjct: 52 PPSLSPFLPDLAMDAPPPPMYEASGGDGGGGG 83
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 50 AESGRQSAEGDASLGLQMSFDTTQKTEDSDMKLDFGFDSDLGQLSEDKSAKSLG 211
A +G SA+ + G+QM TT ED D K D D +SE+ A ++G
Sbjct: 368 APAGNNSADEE---GMQMDAVTTTGAEDEDGKADENVVEDDDGVSEEAVADTVG 418
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 194 IYLLKVVPNLNQSQNQVSCQNLLFFVLCQMTFVSLTTRPL-LQI 66
+ +L V+PNL S+ + L+F V+CQ + RPL LQI
Sbjct: 184 VVILVVLPNLGGSEVTKAKNILMFIVICQYVPRLIRIRPLYLQI 227
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 373 SAPPNVCKVKPTQQLQSPPPQHYNHVGYQG-GYGGLSVPSPP 495
S PP + P Q SP Y+ YQG Y V PP
Sbjct: 235 SPPPPQSQTPPQSQFSSPAQSSYSSPSYQGTDYPSSDVHKPP 276
>05_02_0160 -
7194699-7195019,7195207-7195368,7195806-7195953,
7196286-7196362,7196717-7196787,7196891-7196977,
7197662-7198201,7198430-7198439
Length = 471
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 376 APPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGGLSVPSPPA 498
+PP +P Q +PP N G G Y G + PP+
Sbjct: 33 SPPPAYANRPPQPPSTPPAAMINSSGGSGSYSGGEILPPPS 73
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 424 PPPQHYN-HVGYQGGYGGLSVPSPPAM 501
PPPQ N VG QGG L P PP +
Sbjct: 1066 PPPQRENTSVGIQGGIPPLPPPLPPTL 1092
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 409 QQLQSPPPQHYNHVGYQGGYG 471
Q LQ PP H+ H+G GYG
Sbjct: 478 QHLQIPPMAHFPHLGMGLGYG 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,512,961
Number of Sequences: 37544
Number of extensions: 470801
Number of successful extensions: 1635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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