Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20853
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      31   1.2  
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     29   5.0  
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              28   6.7  
SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)              28   6.7  
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)                28   8.8  
SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_34932| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.38)           28   8.8  
SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 379 PPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGGLSVPSPP 495
           PP V           P PQ Y   GYQ  YGG S+  PP
Sbjct: 605 PPPVGAPGGQPSYSHPMPQGYAPQGYQPEYGGQSMQPPP 643


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 367 TESAPPNVCKVKPTQQLQSPPPQHYNHVGYQ 459
           T S PP   + +P QQL++ PP   N  G Q
Sbjct: 117 TPSKPPQDGQQQPPQQLENQPPTEQNQQGGQ 147


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 239 KCSCGHHVVNPAT*LIYLLKVVPNLN--QSQNQVSCQNLLFFVLCQ 108
           KC CG     P+  L+Y L+  P+LN   ++  VS ++++   LC+
Sbjct: 94  KCRCGKDATKPSVSLLYDLE-YPSLNGKPTETPVSFESIIEATLCR 138


>SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)
          Length = 373

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +1

Query: 262 ADLNLKIASVKKVWEMPAVAENTEELQFTGFEETNTESAPPNVCKVKPTQQLQSPPPQHY 441
           A +N  + S K   E+   A+N +  Q T F ET +E+  PN  ++  +  + +      
Sbjct: 10  ASVNSNVGSEKS--ELLKSADN-KMYQTTSFPETESENRYPNTVELDRSLYMDNTTSGGM 66

Query: 442 NHVGYQG 462
            H+GY G
Sbjct: 67  LHLGYAG 73


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 400 KPTQQLQSPPPQHYNHVGYQGGYGGLSVPSPPAMLFTH 513
           KP Q L + PP H +   YQ  +G  S+  PP +   H
Sbjct: 195 KPVQALFNIPPLHRDIRAYQLIHGAQSLALPPEVCLLH 232


>SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)
          Length = 456

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 271 NLKIASVKKVWEMPAVAENTEELQFTGFEETNTESAPPNVCKVKPTQQLQSPPPQHYNHV 450
           N  +A +KK       +++ EE   TG EE+  ESAPP+  K K  +  QS   + +  V
Sbjct: 265 NTPLARLKKT---KVQSKSQEEESDTG-EESGPESAPPSQQKRKKPESSQSDVDEEFESV 320


>SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 582 QSRGQFGGFPGTPYGAGSAAPYNYQPPPDMFSSIPSQ 692
           Q    + G PG PY A   +PY    PP  +++ P Q
Sbjct: 109 QQSHSYPGQPGQPYQAQGQSPYQQNQPP--YNAPPQQ 143


>SB_34932| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.38)
          Length = 414

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +1

Query: 310 PAVAENTEELQFTGFEETNTESAPPNVCKVK--PTQQLQSPPPQHYNHVGYQGGYGGLSV 483
           P+ A+    LQ     +    ++ PN       PT      PP  Y    YQGG  GL+ 
Sbjct: 193 PSQAQRPTNLQIPARPQGPARASTPNTPTSMGLPTSAGSMNPPSVYGTQAYQGGNQGLTH 252

Query: 484 P 486
           P
Sbjct: 253 P 253


>SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 77  GDASLGLQMSFDTTQKTEDSDMKLDFGFDSDLGQLSEDKS 196
           G+A  G + S  T   TE +DM LD   DS+ G+ SE  S
Sbjct: 65  GEAKQG-KPSDQTVDNTEVADMDLDEDSDSENGKSSESSS 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,328,064
Number of Sequences: 59808
Number of extensions: 481927
Number of successful extensions: 1355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)