Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20853
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.18 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.96 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.9  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 413 NCSPHR-LNITTTWAIREGTVGYQFRRRLPCCLLITAIVRIFSTASPAG 556
           NC P   ++IT    IR  T+ Y F   +PC L+ +  V  F+    +G
Sbjct: 212 NCCPEPYIDITFVVIIRRRTLYYFFNLIVPCVLIASMAVLGFTLPPDSG 260


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +1

Query: 316 VAENTEELQFTGFEET-NTESAPPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGGLSVPSP 492
           VAE  + L F G E T ++   PP   +          P   ++  G   G+GG  +  P
Sbjct: 38  VAEEVDPLPF-GVENTISSVPQPPRSLEGSYDSSSGDSPVSSHSSNGIHTGFGGSIITIP 96

Query: 493 P 495
           P
Sbjct: 97  P 97


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/51 (19%), Positives = 22/51 (43%)
 Frame = +1

Query: 430 PQHYNHVGYQGGYGGLSVPSPPAMLFTHHSNC*DLLNSFPSRVDFTELSWI 582
           P   N +  + G GG  +   P   +  + NC  + +++   +D  +  W+
Sbjct: 85  PSSLNVITNKTGNGGPLLAPYPDWTWAKNENCSGITSAYKIEIDMCDRLWV 135


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 717 APRLLPSYIGLEY*KTYPVAVGSYRGPLN 631
           A  +LP+ I +    TY VA G++ G ++
Sbjct: 50  AKNILPNNISIAGQNTYKVAKGAFTGEIS 78


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 384 RWSAFCIGFFKSSKL 340
           RW   CIG++K +K+
Sbjct: 65  RWIFSCIGYYKLNKI 79


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 239 KCSCGHHVVNP 207
           KC+C  HV+ P
Sbjct: 29  KCNCKRHVIKP 39


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 535 EDPNNCCDE*TTWQAATEL 479
           E P NC D  + W+    L
Sbjct: 313 EPPKNCADSGSIWETGKNL 331


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 642 PYNYQPPPDMFSSIPSQYR 698
           P   +  PD F S+ SQY+
Sbjct: 399 PLELKGSPDGFESVTSQYK 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,831
Number of Sequences: 438
Number of extensions: 4931
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)