Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20853
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 34 0.11
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 34 0.11
At4g23910.1 68417.m03439 expressed protein various predicted pro... 32 0.44
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.44
At4g08380.1 68417.m01384 proline-rich extensin-like family prote... 31 0.58
At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing ... 30 1.8
At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 29 3.1
At4g01290.1 68417.m00170 expressed protein 29 3.1
At1g26250.1 68414.m03202 proline-rich extensin, putative similar... 29 3.1
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 4.1
At3g45760.1 68416.m04946 hypothetical protein hypothetical prote... 29 4.1
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 4.1
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 5.5
At1g05090.1 68414.m00512 dentin sialophosphoprotein-related cont... 28 5.5
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 28 7.2
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 28 7.2
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 28 7.2
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 28 7.2
At3g05545.1 68416.m00609 transcription factor, putative / zinc f... 27 9.5
At2g33520.1 68415.m04109 expressed protein 27 9.5
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 597 FGGFPGTPYGAGSAAPYNYQPPPDMFSSIP 686
FGG G P G G PY +PPP FS P
Sbjct: 171 FGG-QGPPMGRGPPPPYGMRPPPQQFSGPP 199
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 597 FGGFPGTPYGAGSAAPYNYQPPPDMFSSIP 686
FGG G P G G PY +PPP FS P
Sbjct: 171 FGG-QGPPMGRGPPPPYGMRPPPQQFSGPP 199
>At4g23910.1 68417.m03439 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 198
Score = 31.9 bits (69), Expect = 0.44
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +2
Query: 314 LLRKIRRNYNLLDLKKPIQKALHLMCAK*SQRNNCSPHRLNITTTWAIREGTVGYQFRRR 493
+++ +R N+ KKP ++ + RNN S R ++ + A+R+G VG + R
Sbjct: 26 IIKLAKRKTNVNKGKKPRREKNKNQNFNGAARNNTSNVRHHMNSLSAVRQGAVGKRRSRF 85
Query: 494 LPCCLLITA-IVRIFSTASPAGWTLRSFLG 580
+T I R STA+P + R+F G
Sbjct: 86 QGIQFPVTTNIARKASTAAPLDFRGRAFNG 115
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 373 SAPPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGGLSVPSPPAMLFTH 513
S P + +P Q + PPP + + +Q G+GG P PP + H
Sbjct: 280 SMVPPPMQFRPPQGMPPPPPPQF--LNHQQGFGGPRPPPPPQAMGMH 324
>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 437
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 606 FPGTPYGAGSAAPYNYQPPPDMFSSIPSQY 695
+ PY S PY Y PPP +S PS Y
Sbjct: 192 YKSPPYVYSSPPPYAYSPPPYAYSPPPSPY 221
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 618 PYGAGSAAPYNYQPPPDMFSSIPSQY 695
PY S PY Y PPP +S PS Y
Sbjct: 141 PYVYSSPPPYAYSPPPYAYSPPPSPY 166
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 606 FPGTPYGAGSAAPYNYQPPPDMFSSIP 686
+ PY S PY Y PPP +S P
Sbjct: 367 YKSPPYVYSSPPPYTYSPPPYAYSPPP 393
>At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing
protein zinc finger protein OBP3, Arabidopsis thaliana,
EMBL:AF155818
Length = 399
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 403 PTQQLQSPPPQHYNHVGYQGGYGGLSVPSPPAML 504
P QQ Q+PP H+N+ G GG++VP P L
Sbjct: 45 PPQQQQTPPQLHHNN-----GNGGVAVPGGPGGL 73
>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 694
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +1
Query: 283 ASVKKVWEMPAVAENTEELQFTGFEETNTESAPPNVCKVKPTQQLQSPPPQHYNHVGYQ 459
AS +W+ N FT F T E P K+ PT P +H + Y+
Sbjct: 565 ASASLLWKATKAPPNVTRYNFTSFAMTLNELIPGLEEKLPPTDSRLRPDQRHLENGEYE 623
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +2
Query: 2 FNGEVRGRPRSIQELMAESGRQSAEGDASLGL--QMSFDTTQKTEDSDMKLDFGFDSDLG 175
FN E G S E AE R+ L Q +F QK+ K DF F LG
Sbjct: 206 FNDETFGSSDSTSEDRAEEERKRRASFELLRKEHQKAFQERQKSNPDLRKNDFDFTELLG 265
Query: 176 QLSEDKSAKS 205
+ +DK S
Sbjct: 266 ESKDDKGRPS 275
>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 443
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 609 PGTPYGAGSAAPYNYQPPPDMFSSIP 686
P Y + S PY Y+PPP ++SS P
Sbjct: 46 PPYVYNSPSPPPYVYKPPPYIYSSPP 71
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 311 LLLRKIRRNYNLLDLKKPIQKALHLMCAK*SQRNNCSPH 427
L L++I++ Y +L K+ + L L K +NC+PH
Sbjct: 147 LRLQEIQKQYEMLPDKESVDGGLMLEAEKNDGLDNCAPH 185
>At3g45760.1 68416.m04946 hypothetical protein hypothetical protein
At2g39740 - Arabidopsis thaliana, EMBL:AC003000
Length = 442
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 99 KCHLTQHKKQKILT*NLILALIQIWDNFQKINQLSR 206
+C LT K ILT +I + QI D FQK+ L++
Sbjct: 168 ECDLTVESKDGILTSQIIRIISQIDDRFQKLCLLTQ 203
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 355 EETNTESAPPNVCKVK---PTQQLQSPPP 432
E++ T APPN P+Q LQSPPP
Sbjct: 107 EDSETPPAPPNESNDNNPPPSQDLQSPPP 135
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +1
Query: 373 SAPPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGGLSVPSPPAMLFT 510
S+PP V PT QSPPP Y Y PSPP +T
Sbjct: 563 SSPPPVVNCPPT--TQSPPPPKYEQTPSPREY--YPSPSPPYYQYT 604
>At1g05090.1 68414.m00512 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 706
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 38 QELMAESGRQSAEGDASLGLQMSFDTTQKTEDSDMKLDFGF--DSDLGQLSEDKSAKSLG 211
+ L +GR + E D +L L + Q+T S + FGF D + S K +S G
Sbjct: 244 ENLSLFAGRDAQEKDENLSLFEGKEDAQRTSSSKVDESFGFFEGKDAQRTSSSKDDESFG 303
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 394 KVKPTQQLQSPPPQHYNHVGYQGGYGGLSVPSPPAMLFT 510
+++P Q Q P PQ+Y+H Y GG + SP +T
Sbjct: 181 QMQPQPQSQ-PQPQYYHHHMYGGGRVMVGAASPMVPFYT 218
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 340 QFTGFEETNTESAPPNVCKVKPTQQLQSPPPQHYNHVGYQGGYGGLSV 483
+F E+ PP P QQ PP YN G G+ G ++
Sbjct: 382 EFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGDPTGFNGYNM 429
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 600 GGFPGTPYGAGSAAPYNYQPPPDMFSSIP--SQYRMAAGGVQ 719
GG P YG G Y PPP + P + Y+ G+Q
Sbjct: 333 GGAPPPNYGGGPPPQYGAVPPPQYGGAPPQNNNYQQQGSGMQ 374
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 603 GFPGTPYGAGSAAP 644
GFPGTP+G G P
Sbjct: 264 GFPGTPFGGGGTGP 277
>At3g05545.1 68416.m00609 transcription factor, putative / zinc
finger (C3HC4 type RING finger) family protein similar
to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
contains Pfam domain PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 425
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 424 PPPQHYNHVGYQGGYGGLSVPSPPAMLFTHHSNC*DLLNSFP 549
PPPQH++ G G P PPA T +N D++ P
Sbjct: 236 PPPQHFSASGAHVGSPTQPTP-PPAAARTSRANGSDMIRPRP 276
>At2g33520.1 68415.m04109 expressed protein
Length = 97
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 424 PPPQHYNHVGYQGGYGGLSVPSPPAM 501
PPP YQ YGG P PP +
Sbjct: 28 PPPYPPTRTRYQDYYGGYGQPHPPPL 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,405,283
Number of Sequences: 28952
Number of extensions: 348496
Number of successful extensions: 1413
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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