Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20850
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    29   0.92 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   3.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   4.9  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.5  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    25   8.6  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 513 KKKNLVLLMQKVLPTQLPSFPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 692
           K+K     +Q  LP+      N  KK D+A         I ++ +P + DA   +D P+ 
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545

Query: 693 EA 698
           +A
Sbjct: 546 KA 547


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/89 (20%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
 Frame = +3

Query: 408 IPDAEAKSADIKVEEPAAQPEDSKT----EVQATVAEIQKKKNLVLLMQKVLPTQLPSFP 575
           + ++ +KS+ + V+  +  P+ S      E+++ ++    +K+      + +   L +  
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586

Query: 576 NMVKKIDL----APTVESDAAAIPEIKTP 650
            M K+ DL     PT ++++A++P+I  P
Sbjct: 587 TMEKQYDLHRLPTPTSQTESASVPQIANP 615


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 332 VFWGYIVLFGLWYSGYLVVTNW 267
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 311 LFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAK 132
           LF +  SGYL      + GF +++   TS GLT   ++G        GT    +  GI+K
Sbjct: 389 LFSVDASGYL------KMGFMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISK 442

Query: 131 LTAAK 117
             + K
Sbjct: 443 TNSWK 447


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 417 AEAKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLL 536
           AEA + D   + P       K  V  +VAE  +K++L ++
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVI 115


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
 Frame = +3

Query: 450 EPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLP-SFPNMVKKIDL---APTVES 617
           EPA  P D+K ++ A  AEI K + +   ++KV  +++    PN+ K        P ++S
Sbjct: 324 EPA--PADNKGDMGAVFAEINKGEGITSGLRKVDKSEMTHKNPNLRKTGPTPGPKPKIKS 381

Query: 618 DAAAIP----EIKTP--EAADAPKLADNPVDEASLL 707
            A + P     +K P  E  +     +N VD  S++
Sbjct: 382 SAPSKPAETAPVKPPRIELENTKWFVENQVDNHSIV 417


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
 Frame = +3

Query: 402 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQ-----KVLPTQLP 566
           S   DA++   +   E+ A+Q + +K+++  + +E    KN+    +     K++P Q  
Sbjct: 29  SSFSDADSSEEEFVEEKEASQVQSTKSKIATSESEDVTLKNIAKKNKRERNDKLIPQQSN 88

Query: 567 SFPNMVKKIDLAPTVESDAAAIPEIKTPEA--ADAPKLADNPVDEASLL 707
               + K +     VE     + E  +  A   D    A+ P  + SL+
Sbjct: 89  ESEAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLI 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,392
Number of Sequences: 5004
Number of extensions: 42016
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)