Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20850
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.015
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 37   0.020
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             31   0.74 
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  31   1.3  
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_30781| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_16769| Best HMM Match : DUF1690 (HMM E-Value=0.17)                  29   5.2  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   28   6.9  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_10586| Best HMM Match : RVT_1 (HMM E-Value=0.039)                   28   9.1  

>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
 Frame = +3

Query: 417  AEAKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQK----VLPTQLPSFPNMV 584
            A  + A + +EE   Q ED++   +   A ++K + LV+ M++    V  T+ P     V
Sbjct: 897  ASVEEAKVPMEEAETQAEDTEGTSEEADASVEKAETLVVKMEQAEASVEETESPVEEAEV 956

Query: 585  KKIDLAPTVESDAAA----IPEIKTPEAADAPKLADNPVDEASLL 707
             + +    VE++AA     IP  + P+A    +  + PV+EA  L
Sbjct: 957  LEEEAEAPVENEAAVEEAEIPAEEHPQARTPAEETEAPVEEAEAL 1001



 Score = 35.1 bits (77), Expect = 0.060
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
 Frame = +3

Query: 417  AEAKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKID 596
            A  + A++ +EE   Q ED++  V+   A +QK +  V   +              K ++
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEAPAEKTEKPVE 1231

Query: 597  LAPTVESDAAAIPEIKTP--------EAADAPKLADNPVDEA 698
              P+V+   A + E + P        E A++P     PV+EA
Sbjct: 1232 AGPSVQEAEAPVKETERPVEEAEVQAEEAESPAEKGAPVEEA 1273



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 399 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE 506
           ++E+P  +A ++  + E PAA+PE +  E +A V +
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVED 622


>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 31/98 (31%), Positives = 46/98 (46%)
 Frame = +3

Query: 405 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMV 584
           E P  EA+S D KVE P  + E  + EV+ATV E++    +      V   ++P      
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAP--MEEAAASVEEAEVPIEKAET 79

Query: 585 KKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEA 698
           + +D    VE+   +  E    EAAD  +  + PV EA
Sbjct: 80  QPVDTEGPVENAETSFEE---AEAAD--EETEEPVKEA 112


>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +3

Query: 453 PAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKIDLAPTVESDAAAI 632
           P  QP  S+ E    +  ++KK+    ++ K+    LP+ P     +D  P    D    
Sbjct: 477 PIQQPRSSEQEGSTLLGTVKKKERNPYVLPKLSRYVLPTLP--ADPLDSRPLCSPDLTT- 533

Query: 633 PEIKTPEAADAPKLADNP 686
           P +    A+ +PK+A  P
Sbjct: 534 PTVLPSAASVSPKVATTP 551


>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 112 IAFAAVSLAMPVAEE--KDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKP 258
           +A  A  +A  + EE   D+  A P LE A K  D++KP++++     K P
Sbjct: 732 VANEAAGVAQGIKEECEGDLAEALPALEAALKALDTLKPSDISMVKSMKNP 782


>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -1

Query: 266 SRFGFFSSVAAATSVGLTESSIL----GATSRIG*AGTTSFSSATGIA 135
           SR G  SSV  A+SVGL   + L    G  SR G A      S  G+A
Sbjct: 412 SRVGLASSVGLASSVGLASRASLALRAGLASRAGLASRVGLPSCVGLA 459



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 266 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 135
           SR G  S    A+ VG   +S +G  SR+G A +   +S+ G+A
Sbjct: 388 SRVGLVSRAGLASRVG--RASRVGLASRVGLASSVGLASSVGLA 429



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 266 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 135
           SR G  S V   + VGL  +S +G  SR+G A +   +S  G+A
Sbjct: 442 SRAGLASRVGLPSCVGL--ASRVGLASRVGLANSVGLASRVGLA 483



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 257 GFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 135
           G  S V  A+ VGL  S  +G  SR+G A +   +S  G+A
Sbjct: 457 GLASRVGLASRVGLANS--VGLASRVGLASSVGLASRVGLA 495



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 266 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAKL 129
           SR G  S    A   GL  S  +G  SR+G A     +S+ G+A L
Sbjct: 496 SRVGLVSRAGLALRAGLASS--VGLVSRVGLASRVGRASSVGLASL 539



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 266 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGI 138
           SR G  SSV  A+ VGL  +S +G  SR G A     +S+ G+
Sbjct: 478 SRVGLASSVGLASRVGL--ASRVGLVSRAGLALRAGLASSVGL 518


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +3

Query: 426  KSADIKVEEPAAQPEDSKTEVQATVAEI---QKKKNLVLLMQKVLPTQLPSFP--NMVKK 590
            ++ DI VE PA+    +KTE +   AE+   ++ +    L+ +VL +  P+ P  +  + 
Sbjct: 781  RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTYSSDRS 840

Query: 591  IDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEASLLTFHLMRRK 731
            +DL     S A   PE     +  +  +   P  E   ++FH   ++
Sbjct: 841  LDLLSNDRSPAMT-PEKAKFTSKKSEDVKHTPPKEEKDVSFHTFGKR 886


>SB_30781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 498 VAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKIDLA-PTVESD 620
           VA I     L++L+Q+V PT L SFP+  K++++A   +E D
Sbjct: 4   VARIAVFLCLIVLLQEVRPTHLASFPS-EKRVEVADQDIEDD 44


>SB_16769| Best HMM Match : DUF1690 (HMM E-Value=0.17)
          Length = 837

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 462 QPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKIDLAPTVESDAAAIPEI 641
           +P+  + + Q  ++  + K+ L  +  K+L     S  N V  IDL  T+E+  A   EI
Sbjct: 636 RPDLEEAKNQLIISNAKMKQELKEIEDKILHKLSASEGNPVDDIDLIATLEASKAKSGEI 695

Query: 642 K 644
           K
Sbjct: 696 K 696


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +3

Query: 465  PEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPS----FPNMVKKIDLAPTVESDAAAI 632
            P +S+ E  +   E     + V L +   P   PS     P    KI      ES  ++I
Sbjct: 1556 PPESRPEKASEEDEDMPSPHSVDLTRDGTPPTSPSPEATNPLSDPKITTFKVPESPTSSI 1615

Query: 633  PEIKTPEAADAPKLADNPVDEASL 704
                 P +AD+P +A +P+D  ++
Sbjct: 1616 EATTAPTSADSPTVATSPIDSPTV 1639


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 423 AKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQK 545
           A  AD+  EEPA++   ++TE+     E  K K+L ++ Q+
Sbjct: 340 AYMADVDDEEPASESLATRTEISELYTESAKLKSLGVIHQE 380


>SB_10586| Best HMM Match : RVT_1 (HMM E-Value=0.039)
          Length = 590

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +3

Query: 486 VQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKIDLAPTVESDAAAIPEIKTPEAADA 665
           +Q+ + E++K+   +   +KVL  ++    N + +ID  PT+E++ A   E +  E    
Sbjct: 101 LQSKIQELRKQNETLASQKKVLENEVFRLANSLSRID--PTLETERAYEREKEEKEIL-- 156

Query: 666 PKLADNPVDEASLLTFHL 719
             L  N  D  S L   L
Sbjct: 157 --LVSNSADRNSCLELPL 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,697,333
Number of Sequences: 59808
Number of extensions: 298826
Number of successful extensions: 1251
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)