Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20850
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    35   0.065
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    34   0.11 
At3g49990.1 68416.m05466 expressed protein                             33   0.26 
At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to ...    30   1.9  
At3g01290.1 68416.m00037 band 7 family protein similar to hypers...    29   3.2  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   4.3  
At5g19250.1 68418.m02292 expressed protein                             28   5.7  
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil...    28   5.7  
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil...    28   5.7  
At4g18350.1 68417.m02722 9-cis-epoxycarotenoid dioxygenase, puta...    28   7.5  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    27   9.9  
At1g03350.1 68414.m00314 BSD domain-containing protein contains ...    27   9.9  

>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 38/139 (27%), Positives = 56/139 (40%)
 Frame = +3

Query: 270 VSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVE 449
           +   E+P +PE  K + AP+  +I                  K  E+P    K  +I+  
Sbjct: 233 IQKPELPKLPEVPKLE-APKVPEIQKPELPKMPELPKMPEIQKP-ELP----KMPEIQKP 286

Query: 450 EPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKIDLAPTVESDAAA 629
           E    PE  K E+  TV E+ K +       ++   +LP  P  V K +L    E    A
Sbjct: 287 ELPKVPEVPKPELP-TVPEVPKSE--APKFPEIPKPELPKIPE-VPKPELPKVPEITKPA 342

Query: 630 IPEIKTPEAADAPKLADNP 686
           +PEI  PE    P+L   P
Sbjct: 343 VPEIPKPELPTMPQLPKLP 361



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 1/147 (0%)
 Frame = +3

Query: 249 EEAEPAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEA- 425
           EE +   +   E+P  PE  K ++ P+  +I                  K  EIP  E  
Sbjct: 99  EETKLPDIPKLELPKFPEIPKPEL-PKMPEIPKPELPKVPEIQKPELP-KMPEIPKPELP 156

Query: 426 KSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKIDLAP 605
           K  +I   +    PE+SK EV   + E +K +       KV     P  P    K+   P
Sbjct: 157 KFPEIPKPDLPKFPENSKPEVPKLM-ETEKPE-----APKVPEIPKPELP----KLPEVP 206

Query: 606 TVESDAAAIPEIKTPEAADAPKLADNP 686
            +E  A  +PEI+ PE    P+L   P
Sbjct: 207 KLE--APKVPEIQKPELPKMPELPKMP 231



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +3

Query: 396 KSSEIPDAEA-KSADIKVEEPAAQPEDSKT-EVQATVAEIQKKKNLVLL-MQKVLPTQLP 566
           K  E+P  EA K  +I+  E    PE  K  E+Q    E+ K   +  L   KV   Q P
Sbjct: 201 KLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKP--ELPKLPEVPKLEAPKVPEIQKP 258

Query: 567 SFPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKL 674
             P M +   +    + +   +PEI+ PE    P++
Sbjct: 259 ELPKMPELPKMPEIQKPELPKMPEIQKPELPKVPEV 294


>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = -1

Query: 230 TSVGLTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 114
           T++ +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 108 TALEITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 408 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLV 530
           +P   A+  D+K E P A+P   KT  Q +  E +++KN V
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEEKKERKNAV 462


>At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to
           EXL3 (GP:15054386) [Arabidopsis thaliana]
          Length = 337

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 317 IVLFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG 177
           +V+F ++   Y + T  S FGF  +  A    GL E+SIL     +G
Sbjct: 254 LVVFDIYQPLYDLATRPSEFGFAEARRACCGTGLLETSILCNPKSVG 300


>At3g01290.1 68416.m00037 band 7 family protein similar to
           hypersensitive-induced response protein [Zea mays]
           GI:7716470; contains Pfam profile PF01145: SPFH domain /
           Band 7 family
          Length = 285

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 228 FGRFNRVINFGRDF*NWLSGNYV 160
           FG+F +V+N G  F  W+ G+YV
Sbjct: 21  FGKFQKVLNPGLQFVPWVIGDYV 43


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 279 DEVPAIPEAKKDDIAPE 329
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


>At5g19250.1 68418.m02292 expressed protein
          Length = 196

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 564 PSFPNMVKKIDLAPTVESDAAAIP 635
           P+ PN++ K  L PTV  D A +P
Sbjct: 88  PNLPNLLSKCRLNPTVTRDGAILP 111


>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +3

Query: 405 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE--IQKKKNLVLLMQKVLPTQLPSFPN 578
           E+   E    ++K EEPA   E +KTE  +   E  +++ K        V+  + P    
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGETPETAVVEEKKPEVEE 192

Query: 579 MVKKIDLAPTVESDAAAIPE-IKTPEAADAPK 671
             ++   AP V       PE   T   A+ PK
Sbjct: 193 KKEEATPAPAVVETPVKEPETTTTAPVAEPPK 224


>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +3

Query: 405 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE--IQKKKNLVLLMQKVLPTQLPSFPN 578
           E+   E    ++K EEPA   E +KTE  +   E  +++ K        V+  + P    
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGETPETAVVEEKKPEVEE 192

Query: 579 MVKKIDLAPTVESDAAAIPE-IKTPEAADAPK 671
             ++   AP V       PE   T   A+ PK
Sbjct: 193 KKEEATPAPAVVETPVKEPETTTTAPVAEPPK 224


>At4g18350.1 68417.m02722 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative neoxanthin
           cleavage enzyme, Lycopersicon esculentum,
           PATCHX:E325797; and viviparous-14, Zea mays,
           PATCHX:G2232017; similar to 9-cis-epoxycarotenoid
           dioxygenase [Phaseolus vulgaris][GI:6715257]
          Length = 583

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = +3

Query: 462 QPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPSFPNMVKKIDLAPTVESDAAAIPEI 641
           QP+  K  VQ  V E+ KK+ L        P Q    P  +     A  +  DAA    I
Sbjct: 31  QPKVIKCTVQIDVTELTKKRQLFTPRTTATPPQ--HNPLRLNIFQKAAAIAIDAAERALI 88

Query: 642 KTPEAADAPKLADNPVDEA 698
              + +  PK AD  V  A
Sbjct: 89  SHEQDSPLPKTADPRVQIA 107


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 381 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 295
           FL F   E  PV  ++ L  L RP WPL+
Sbjct: 25  FLSFPRPENTPVQLFQLLHTLERPGWPLL 53


>At1g03350.1 68414.m00314 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 470

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 145 VAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEK-KP 258
           V EEK  V A P       I DSVKPT   A  ++  KP
Sbjct: 344 VPEEKSFVDAAPPASDEAPIQDSVKPTSDEAPIQDSVKP 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,674
Number of Sequences: 28952
Number of extensions: 216480
Number of successful extensions: 741
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)