Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20847
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 1e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 102 3e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 80 2e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.18
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.43
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 1.7
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.7
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.3
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 28 7.0
SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27) 28 7.0
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 28 9.2
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (273), Expect = 1e-25
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 437 TREHALLAFTLGVKQLIVGVNKMD--PLNHHTVSP 535
TREHA+L +LGV QLIV +NK+D L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 102 bits (245), Expect = 3e-22
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +2
Query: 248 GYPIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 427
G +++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266
Query: 428 NGQTREHALLAFTLGVKQLIVGVNKMD 508
GQTREHA+LA T GVK L++ VNKMD
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNKMD 293
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
Score = 33.9 bits (74), Expect = 0.14
Identities = 11/24 (45%), Positives = 21/24 (87%)
Frame = +1
Query: 523 YSEPRFEEIKKEVSSYIKKIGYNP 594
++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = +2
Query: 248 GYPIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 364
G IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 187 MGKGSFKYAWVLDKLKAERE 246
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 637 NMLEPSTKMPWFKGWQVERKE--GKADGNAS 723
NM+ +++MPWFK W +ER + K + NAS
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANAS 83
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 479 QLIVGVNKMD 508
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 308 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 487
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 488 VGVNKMD 508
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/85 (25%), Positives = 33/85 (38%)
Frame = +2
Query: 263 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 442
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 443 EHALLAFTLGVKQLIVGVNKMDPLN 517
E A GV +I +NK+D N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/52 (21%), Positives = 24/52 (46%)
Frame = +2
Query: 248 GYPIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
G + ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 64 GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 58 THINIVVIGHVDSGKSTTTGHLIY 129
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 463 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 591
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 625 WHGDNMLEPSTKMPWFKGWQVERKE 699
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 508 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 648
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 433 SNP*ACLARFHPRC-----QTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 591
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27)
Length = 545
Score = 28.3 bits (60), Expect = 7.0
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Frame = -3
Query: 561 YFLLDFLKSGLTVWW-FSGSILFTP-TMSCLTPRVKASKACSRV*PFLEIPASNSPVPAA 388
+ L+ FL +GL ++ F+ L TP L + + C P + A+ P
Sbjct: 16 FSLVGFLANGLVLYLIFTTKSLRTPMNYLLLNLAIMDAITCCLTVPHIATGAAVYPGNLM 75
Query: 387 TMSTAQSA*EVPVIMFLMK-SLCPGASMMVT*YLLVS-NFQRAISIGYPLTLSL 232
M + E V+ + K S+ V YLL++ F+R +++ YPLT S+
Sbjct: 76 LMQNIARSSEPSVVTAICKVSVFAWLGSTVQPYLLIAVAFERFMAVVYPLTSSV 129
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 681 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 571
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 463 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 591
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 27.9 bits (59), Expect = 9.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 262 IDWIPTHAQPLVCPIPKH 209
+DWIP + + VC +P H
Sbjct: 247 VDWIPNNGKVAVCDVPPH 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,181,741
Number of Sequences: 59808
Number of extensions: 527263
Number of successful extensions: 1572
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -