Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20846
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 55 8e-09
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 49 4e-07
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 35 0.009
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.083
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 1.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 4.1
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.5
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 5.5
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 5.5
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 7.2
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 7.2
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.5
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 9.5
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 9.5
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 9.5
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 54.8 bits (126), Expect = 8e-09
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 270 LLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQT 446
LL L+ G +LC++ I+ S+M F MENI+AF+ A+Q+ VP+Q+ FQT
Sbjct: 27 LLDQLQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQT 85
Query: 447 VDLWERQNLNSVVICLQSLGR 509
DL+ER+N V+ + S R
Sbjct: 86 SDLFERRNDEQVLRSIHSFSR 106
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLW 458
L++G +L L P+ +IK ++ + F+ +NIN FL+ +G+P F+ D++
Sbjct: 69 LRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIY 128
Query: 459 ERQNLNSVVICLQSL 503
E +NL V+ C+ +L
Sbjct: 129 EGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 34.7 bits (76), Expect = 0.009
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQLGVPAQETFQTVDLW 458
L +G +LC+LA +P + ++ + +NAF +G+ F+T DL
Sbjct: 92 LVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPFRFETKDLV 151
Query: 459 ERQNLNSVVICLQSLGRRLE 518
R N+ V+ CL +L L+
Sbjct: 152 RRFNIPKVIYCLHALSYLLD 171
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 31.5 bits (68), Expect = 0.083
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +3
Query: 285 KDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 419
KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 150 KDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 339 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRRL 515
++ +S A E + AF+E A+Q G+P E W+ + + +L + L
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSL 176
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 16 PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 192
P PP L S H +FT F+ L R+ + S RI +P D QI
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225
Query: 193 GAG 201
G
Sbjct: 226 RTG 228
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 276 RMLKDGTLLCKLANNIHPNMIKKINTSS 359
R LK+ T + L+++IHPN +++ S
Sbjct: 4 RFLKENTEIINLSSSIHPNRDSYLDSQS 31
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 431 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 318
L R+ LS +D++ L+G + C HV D+
Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 395 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKAGT 520
P+ + V CTG G+ V +S D L +TG+ T
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRT 157
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 146 LIWSLGCLPFRTNNNLINYLNK 81
LIW+ CL T+ +LI YL++
Sbjct: 123 LIWNQWCLSHLTDEDLIAYLSR 144
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 237 PVIIRIHSKDSWASSSLYLL 178
P IIR H +D W S + LL
Sbjct: 331 PCIIRSHKEDDWVSDIVSLL 350
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 296 SSVQASQQHPPEH--DQ-KDQHIVDGLQVHGEYQRFPRSRKTVG 418
+S++ S HP + DQ D+ VDGL + Y PR+R G
Sbjct: 275 ASLEDSLSHPTKSILDQLADKMEVDGLNNNSNYSATPRTRVVNG 318
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 337 IMFGWMLLASLHRRVPSLSIRRSCPYPLG-VLWFAGD 230
I+F W + SL+ R+ + I+ C G +LW D
Sbjct: 174 ILFDWFIGRSLNPRIGNFDIKCFCELRPGLILWVVFD 210
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 394 KALIFSMHLKAIDDVLIFLIMFGWMLLA 311
K LIF+ + DD+ FL GW LA
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALA 398
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 337 IMFGWMLLASLHRRVPSLSIRRSCPYPLGVLWFAGDHPNPFQGL 206
I+ W ++ R P C L LW DHP+ F+ L
Sbjct: 306 IVRSWATQMNIMDRYPEYQF--VCSQALQYLWLKEDHPDVFEKL 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,523
Number of Sequences: 5004
Number of extensions: 51860
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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