Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20846
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 35 0.036
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 34 0.064
09_03_0170 - 13035371-13036504 32 0.26
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 31 0.59
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 31 0.59
09_03_0169 - 13010909-13012033 31 0.79
01_06_0201 - 27477392-27479728 31 0.79
07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596... 30 1.0
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 29 1.8
09_03_0174 - 13097138-13098265 29 1.8
06_03_0323 - 19579118-19579489 29 3.2
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 29 3.2
08_02_0916 - 22592039-22592196,22592361-22592781 28 4.2
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 28 4.2
03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071 28 5.5
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 27 7.3
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 27 7.3
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 27 7.3
03_04_0181 - 18192774-18192970,18193519-18193882 27 9.7
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 35.1 bits (77), Expect = 0.036
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPNMIKKI---------NTSSMAFKCMENINAFLEAARQLGVPAQE 434
L++G +LC N + P + K+ + A++ EN+ FL + LG+P
Sbjct: 88 LRNGIVLCNALNKVQPGSVPKVVEAPSDSADGAALCAYQYFENVRNFLMGLQDLGLP--- 144
Query: 435 TFQTVDLWERQNLNSVVICLQSL 503
TF+ DL + VV C+ SL
Sbjct: 145 TFEASDLEKGGKGVRVVDCVLSL 167
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 34.3 bits (75), Expect = 0.064
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 267 QLLRMLKDGTLLCKLANNIHPNMIKKI-NTSSMAFKCMENINAFLEAARQLGVPAQETFQ 443
+L +L DGT+LC + N + P ++++ + + + ++ FL +G+P F
Sbjct: 41 ELRELLSDGTVLCHIVNALIPGVLEESWGAYASSDQHAGHVKKFLAVVADMGLPG---FS 97
Query: 444 TVDLWERQNLNSVVICL 494
DL E +++ VV CL
Sbjct: 98 VKDL-EEGSMSGVVDCL 113
>09_03_0170 - 13035371-13036504
Length = 377
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 276 VEVVHIP*VFSGSPVIIRIHSKDSWASSSLYLLLIFLWASAANPDLVAR 130
V+ +H VF+GS + +K +W + ++L + W + DLVAR
Sbjct: 273 VDSLHSQTVFTGSLTTMMKKTKFNWMQNMIFLPRFYQWPETVHVDLVAR 321
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 31.1 bits (67), Expect = 0.59
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 309 LANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVI 488
+ N ++++ + AF+ EN+ FL AA+++G+P F+ DL + VV
Sbjct: 121 VVNTAADSVLQPDGAALSAFQYFENVRNFLVAAQEIGLPC---FEASDLEQGGKSARVVN 177
Query: 489 CLQSL 503
C+ +L
Sbjct: 178 CVLAL 182
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 31.1 bits (67), Expect = 0.59
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 270 LLRMLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 419
L + KDG LLCKL N P I + INT + ++ EN L +A+ +G
Sbjct: 189 LFHLTKDGVLLCKLINLAVPGTIDERAINTKKLLNLWEKNENHTLCLNSAKAIG 242
>09_03_0169 - 13010909-13012033
Length = 374
Score = 30.7 bits (66), Expect = 0.79
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 252 VFSGSPVIIRIHSKDSWASSSLYLLLIFLWASAANPDLVAR 130
+F+GS + SK W + ++L + W + DLVAR
Sbjct: 278 IFTGSLTTMMKRSKFKWMQNMIFLPRFYKWPETVHVDLVAR 318
>01_06_0201 - 27477392-27479728
Length = 778
Score = 30.7 bits (66), Expect = 0.79
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 200 PAPRCICC*SFSGLQLQILIWSLGCLPFRTNN 105
P PRC C + L+ WS GC P TNN
Sbjct: 291 PGPRCSCLPGYEMADLEN--WSKGCQPMFTNN 320
>07_01_0773 +
5963165-5963306,5963440-5963489,5963580-5963645,
5964162-5964188,5965320-5965375,5966613-5966681,
5966901-5966995,5967141-5967251,5970545-5970879,
5971218-5971253,5971254-5971421
Length = 384
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 230 SSESIPRTRGPAPRCICC*SF 168
S E PR RGP PRC C S+
Sbjct: 5 SPERSPRRRGPTPRCSACESY 25
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +3
Query: 288 DGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFL---EAARQLGVPAQETFQTVDLW 458
DGT C + P IK I C+E +N+ + +QL + QE F+ +++
Sbjct: 351 DGTPRCCSCERMEPMDIKYITLDDGRKLCLECLNSSIMDTPECQQLYMDIQEFFEGLNMK 410
Query: 459 ERQNLNSVVICLQSLGRRLE 518
Q + +++ Q+L LE
Sbjct: 411 VEQQVPILLVERQALNEALE 430
>09_03_0174 - 13097138-13098265
Length = 375
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 276 VEVVHIP*VFSGSPVIIRIHSKDSWASSSLYLLLIFLWASAANPDLVAR 130
VE +H VF+GS I K W + ++L + W + DLV R
Sbjct: 272 VESLHGQVVFTGSLTTIIKKPKFKWMENKVFLPRFYNWPETIHVDLVTR 320
>06_03_0323 - 19579118-19579489
Length = 123
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 364 PSSAWRISTLSSKPQDSWVYRHRKLFKLSTCGRDRISTPS*SACSHWAEGWNLREAVNR 540
PS+ W +ST +S +D W H ++ + R PS S + W+L E R
Sbjct: 3 PSTNWGVSTWASASEDRWHAPHDIHWRDNQPSRSSGVPPSPSEWRSSSSRWDLGEITRR 61
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 267 QLLRMLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 419
QL +++DG LLCKL N P I + IN + ++ EN L +A+ +G
Sbjct: 161 QLFDLVRDGVLLCKLINLAVPGTIDERAINKKRVLNPWERNENHTLCLNSAKAIG 215
>08_02_0916 - 22592039-22592196,22592361-22592781
Length = 192
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 156 LKPRERSTANTARSWPTSPW 215
L+ R+R+T+ TAR+W PW
Sbjct: 29 LRSRQRATSLTARNWCRRPW 48
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 270 LLRMLKDGTLLCKLANNIHPNMI--KKINTSS--MAFKCMENINAFLEAARQLG 419
+ +++DG LLCKL N P I + INT ++ EN L +A+ +G
Sbjct: 159 IFNLVRDGVLLCKLINVAVPGTIDERAINTKKDPNPWERNENHTLCLNSAKAIG 212
>03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071
Length = 332
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 225 RIHSKDSWASSSLYLLLIFLWASAANPDLVARL 127
RIH + W +YLL W SAA DLV L
Sbjct: 67 RIHRQQPW-KHRIYLLWAAEWRSAAKEDLVFAL 98
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 94 FIKLLLVRNGKQPSDQIRICS*SPEKDQQQIQRG 195
F+KL+ VRNG PSD I C+ P + + G
Sbjct: 86 FLKLIPVRNGSSPSD-IEECTNVPSVAAESLLEG 118
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 31 ACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQPSDQIRIC 153
A + S+HS T + VC + ++ + V K+ ++ C
Sbjct: 26 AIIGSMHSSMTLFSVCKILSLYVDMCFVDYSKEVHSYLKYC 66
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 488 DHDGVEILSLPQVDSLKSFLCRYTQLSCG 402
DH G+EI+ D+ K +L Y CG
Sbjct: 146 DHMGMEIIETGNPDAFKQYLQEYENTICG 174
>03_04_0181 - 18192774-18192970,18193519-18193882
Length = 186
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 172 DQQQIQRGAGPR------VLGMDSDDHRRTREH 252
D+QQ ++ GPR VLG SD H R R H
Sbjct: 45 DRQQWRQPRGPRCPHSRAVLGSSSDSHHRHRNH 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,493
Number of Sequences: 37544
Number of extensions: 369672
Number of successful extensions: 1025
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -