Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20846
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 3e-17
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 9e-14
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 68 4e-12
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 56 2e-08
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 40 0.002
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 39 0.003
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 35 0.049
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 31 0.46
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34) 29 1.9
SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20) 28 4.3
SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2) 28 5.7
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 27 7.5
SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_13635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89) 27 9.9
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 85.4 bits (202), Expect = 3e-17
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +3
Query: 258 GYGQLLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQET 437
G + +LKDG +LC++AN + N+ KIN+S MAFK MEN FLE +GVP +
Sbjct: 90 GADDVHEVLKDGQVLCRVANKLGGNI--KINSSKMAFKMMENTGKFLEFCDTIGVPKTDM 147
Query: 438 FQTVDLWERQNLNSVVICLQSLGRRLEPTG 527
FQTVDL+E+QN+ V+ + +LGR+ TG
Sbjct: 148 FQTVDLYEKQNMPGVINGIHALGRKAHSTG 177
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 73.7 bits (173), Expect = 9e-14
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +3
Query: 258 GYGQLLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLE-AARQLGVPAQE 434
G + + LKDG +LC+LAN + ++ KIN M FK MENI FL LGV +
Sbjct: 454 GVDTVHQTLKDGQVLCRLANRLGGDL--KINQQKMPFKQMENIGNFLSFIENNLGVAKND 511
Query: 435 TFQTVDLWERQNLNSVVICLQSLGRRLEPTG 527
FQTVDL+E+ N+ +V+ C+ ++GRR G
Sbjct: 512 LFQTVDLYEKSNMWNVICCIHAVGRRAYSLG 542
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/67 (49%), Positives = 42/67 (62%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWE 461
LK G +LCKLAN I P IKKIN + M F MENI F + GV +Q F T+DL+E
Sbjct: 94 LKSGVVLCKLANAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGVASQYQFVTIDLFE 153
Query: 462 RQNLNSV 482
+N++ V
Sbjct: 154 GKNMHQV 160
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 65.7 bits (153), Expect = 2e-11
Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Frame = +3
Query: 189 ARSWPTSPWN---GFG*SPANQRTPRGYGQLLRMLKDGTLLCKLANNIHPNMIKKINTSS 359
AR W + + +G NQR + + LR G +LCK+AN I N I KI S+
Sbjct: 278 ARRWVETMYGDTVAWGEERPNQRPGETFAEPLR---SGVILCKIANKIKSNAIPKIGESN 334
Query: 360 MAFKCMENINAFLE-AARQLGVPAQETFQTVDLWERQNLNSV 482
+F ENI+ FL+ R LG+ FQTVDL+ERQN+ V
Sbjct: 335 KSFVMQENISKFLDFCERVLGLDRLNLFQTVDLFERQNVGMV 376
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 125 NNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE 241
+N+ G AE RKI SKY EL + +W+ + GE
Sbjct: 9 SNKHKSFGLTAEVNRKIQSKYDTELEMQCRDWLEKMLGE 47
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 55.6 bits (128), Expect = 2e-08
Identities = 29/74 (39%), Positives = 43/74 (58%)
Frame = +3
Query: 258 GYGQLLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQET 437
G + ++LKDG +L +LA + + K+N +M FK MENI FL LGV + +
Sbjct: 48 GPDDVQKVLKDGKILARLAIKLGAKI--KVNEQNMPFKQMENIGNFLSHCGHLGVASGDQ 105
Query: 438 FQTVDLWERQNLNS 479
FQT DL++ N+ S
Sbjct: 106 FQTADLYDNANMTS 119
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 146 GFAAEAQRKINSKYSEELAHESLEWIRMITGE 241
G +A A RKI KY + E+ WI + GE
Sbjct: 9 GMSAAANRKILEKYDPQQEEEARIWIEAVLGE 40
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +3
Query: 312 ANNIHPNMIKK--INTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNL 473
AN I P +IKK +N M FK MENI F+ + GV + F TVDL+E++N+
Sbjct: 188 ANAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPNMIKKINTSSMAF------KCMENINAFLEAARQLGVPAQETFQ 443
L DG +LC L N+ + I I+ S KCM+N++ FLEA ++LGV +
Sbjct: 336 LADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDRELLCS 395
Query: 444 TVDLWERQNLNSVVICLQSL 503
+ D+ + ++ V +Q+L
Sbjct: 396 SADILQEKSPQRVCATVQAL 415
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPNMIKKINTSSM--AFKCMENINAFLEAARQL-GVPAQETFQTVD 452
L+DG LLC++AN +HP + + F C++NI FL A +L + + F +
Sbjct: 55 LRDGVLLCQVANVLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDLFDANE 114
Query: 453 LWERQNLNSVVICLQSL 503
L++ + VV L L
Sbjct: 115 LYDVSDFGKVVNTLSKL 131
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 348 NTSSMAFKCMENINAFLEAARQ--LGVPAQETFQTVDLWERQNLNSVVICLQSLGRRL 515
N S + ENI FL A ++ Q+ FQTV L+ERQNL V+ +Q+ R++
Sbjct: 889 NRKSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARKV 946
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 249 TPRGYGQLLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPA 428
TP L DG LLC+L N+ + +IN A +N++ F A LG+
Sbjct: 43 TPFKNDDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSVFFRACEALGLDK 102
Query: 429 QETFQTVDLWE 461
+ F+ DL E
Sbjct: 103 YQLFEHEDLDE 113
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +3
Query: 375 MENINAFLEAARQLGVPAQETFQTVDLWERQNL 473
MENI FL LGV + FQTVDL+E+QN+
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNM 50
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 34.7 bits (76), Expect = 0.049
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 375 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSV 482
M I FL+ GV + FQTVDL+E+QN+ V
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 128 NRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE 241
NR G AE RK+++KY + E+++WI + GE
Sbjct: 661 NRQKGYGMTAELSRKMSAKYDPVMDAEAVDWIEKVLGE 698
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 31.5 bits (68), Expect = 0.46
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Frame = +3
Query: 282 LKDGTLLCKLANNI----------HPNMI--KKI--------NTSSMAFKCMENINAFLE 401
L+DGTLLCKLAN I H + KKI + S F EN+ FL
Sbjct: 697 LEDGTLLCKLANYIQEMADTYGQKHNTHVPGKKIKFKESKRGHRESKLFHSRENVQKFLT 756
Query: 402 AARQLGVPAQETFQTVDLWE----RQNLNSVVICLQSLGRRL 515
R +P F++ D+ R +VICL + RR+
Sbjct: 757 WCRWHDIPEAILFESNDVVLVDECRTGGREIVICLMEIARRV 798
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.7 bits (66), Expect = 0.80
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 447 VDLWERQNLNSVVICLQSLG 506
V +W +N +SVV+C+QSLG
Sbjct: 258 VSVWASENTSSVVVCVQSLG 277
>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
Length = 354
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 123 QTTERPNQDLQLKPRERSTANTARSW--PTSP 212
+T RP Q LQ+KP S A T R+ PT P
Sbjct: 213 ETARRPGQGLQVKPAAESNAQTDRNARPPTKP 244
>SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20)
Length = 303
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 113 FEMANNRATKSGFAAEAQRKINSKYSEELAHESLEWI 223
FE N A AE QRKIN K E++ + WI
Sbjct: 180 FERWQNHADSLKKEAETQRKINQKIQEKVNNNIGTWI 216
>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
Length = 689
Score = 27.9 bits (59), Expect = 5.7
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 201 PTSPWNGFG*SPANQRTPRGYGQLLRMLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCM 377
PTSP + +P+N T L R L TL KL + + + T+ S F+ M
Sbjct: 609 PTSPVSNKDENPSNGSTGLSGNHLRRSLVLPTLAAKLRMTLQDKQNQSLRTNRSNQFRRM 668
Query: 378 ENINAFLEAA 407
N++ + AA
Sbjct: 669 INLDKYERAA 678
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 178 QQIQRGAGPRVLGMDSDDHRRTREH 252
Q+ QR GP+V+G +S D R RE+
Sbjct: 2291 QRPQRPMGPQVVGKESRDEARKREY 2315
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Frame = +2
Query: 257 GIWTTSTNA*RRHSSVQASQQHPPEHDQKDQHIVD---GLQVHGEYQRFPRSRKTVGCTG 427
GI+ T+ A R H S + + Q QH + E QR S + G G
Sbjct: 360 GIYHTTPRAARGHGSTNRGSKTQKKQQQYQQHYYNRDSSSSTDKEVQRDKNSSPSSGSGG 419
Query: 428 TGNFSNCRPVGETESQLRRDLLAVTGQK 511
G S ES D GQ+
Sbjct: 420 EGRSSQSPSTPSVESPKSNDSPQPAGQQ 447
>SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 508 LPSDCKQITTELRFCLSHRSTV*KVSCAGTPNCLAASR 395
LP+ C+++ + C S R T VS +GT + +R
Sbjct: 321 LPAGCQEVCDNIGACTSGRITQWNVSVSGTTSLYTCAR 358
>SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +2
Query: 326 PEHDQKDQHIVDGLQVHGEYQRFPRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTG 505
P + +D ++++ + +R+T+GC T N + C T + ++LLA +
Sbjct: 312 PANSLEDHNLINDAMISSTNHNISTTRRTLGCATTEN-AMCYLANPTACGI-QNLLAPSS 369
Query: 506 QKAGTYGKPSIGP 544
+ P IGP
Sbjct: 370 LCTTSTTTPLIGP 382
>SB_13635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 364 PSSAWRISTLSSKPQDSWV 420
PSS W ++TL+SKP WV
Sbjct: 32 PSSLW-VTTLTSKPSSLWV 49
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 312 LACTEECRL*AFVEVVHIP*VFSGSPVIIRIHSKDSWASSSLY 184
+AC +EC L AFV ++ P + G+ V+I K ++ +Y
Sbjct: 1297 IACPDECSLLAFVSLL-APAIIRGNTVVIVPSEKYPVVAADMY 1338
>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
Length = 589
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 270 LLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEA 404
L R K+ T L +L NN + K ++ + +FK +EN N L +
Sbjct: 88 LNRRKKENTKLRELLNNAQEDAKKPVSENMESFKRIENENEHLRS 132
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 270 LLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEA 404
L R K+ T L +L NN + K ++ + +FK +EN N L +
Sbjct: 3194 LNRRKKENTKLRELLNNAQEDAKKPVSENMESFKRIENENEHLRS 3238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,709
Number of Sequences: 59808
Number of extensions: 418892
Number of successful extensions: 1279
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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