Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20846
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical pr... 93 9e-20
U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protei... 93 9e-20
AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein. 93 9e-20
AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin prot... 86 2e-17
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 66 2e-11
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 41 5e-04
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 39 0.003
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 39 0.003
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 39 0.003
AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA transcri... 31 0.71
AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like tra... 31 0.71
AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying de... 31 0.71
U88170-3|AAB42247.1| 338|Caenorhabditis elegans Hypothetical pr... 27 6.6
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 27 6.6
AF024502-7|AAB70377.3| 352|Caenorhabditis elegans Hypothetical ... 27 6.6
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p... 27 8.7
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p... 27 8.7
>Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical
protein F43G9.9 protein.
Length = 192
Score = 93.5 bits (222), Expect = 9e-20
Identities = 46/88 (52%), Positives = 64/88 (72%)
Frame = +3
Query: 270 LLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTV 449
L+++ +DG+LLC LAN++ P +KK+NTS+MAFK MENI+ FL+ A + V E FQTV
Sbjct: 56 LVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMENISFFLKFAEEY-VQKSELFQTV 114
Query: 450 DLWERQNLNSVVICLQSLGRRLEPTGSR 533
DL+E Q+ N+V+ICL SL R+ E R
Sbjct: 115 DLYEGQDPNAVLICLASLARKSEKNFGR 142
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 122 ANNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGEPENT*G 259
+++RA KSG A EAQ+KI KY + LA E L+W++ +TG+ +T G
Sbjct: 6 SSDRAEKSGIALEAQQKIYEKYDKNLAGEILQWVQNVTGQSFDTQG 51
>U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protein 3
protein.
Length = 142
Score = 93.5 bits (222), Expect = 9e-20
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +3
Query: 279 MLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLW 458
+LKDGTLLCK AN I IKK+ F CMENINAF+E A++ GVP +ETFQ+V+L
Sbjct: 54 LLKDGTLLCKAANGIEAGSIKKVQKPISTFACMENINAFVEFAKKQGVPNEETFQSVELV 113
Query: 459 ERQNLNSVVICLQSLGRRLEPTG 527
E ++L SV + L SLGR L+ G
Sbjct: 114 EGRDLFSVCVTLLSLGRVLQKAG 136
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 128 NRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGEPENT*G 259
NR T G ++K +SK+ ++ A LEWI+ ++GE +T G
Sbjct: 3 NRTTAGGIGFAVRQKQDSKFIDKEATLLLEWIKKLSGENISTSG 46
>AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein.
Length = 192
Score = 93.5 bits (222), Expect = 9e-20
Identities = 46/88 (52%), Positives = 64/88 (72%)
Frame = +3
Query: 270 LLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTV 449
L+++ +DG+LLC LAN++ P +KK+NTS+MAFK MENI+ FL+ A + V E FQTV
Sbjct: 56 LVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMENISFFLKFAEEY-VQKSELFQTV 114
Query: 450 DLWERQNLNSVVICLQSLGRRLEPTGSR 533
DL+E Q+ N+V+ICL SL R+ E R
Sbjct: 115 DLYEGQDPNAVLICLASLARKSEKNFGR 142
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 122 ANNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGEPENT*G 259
+++RA KSG A EAQ+KI KY + LA E L+W++ +TG+ +T G
Sbjct: 6 SSDRAEKSGIALEAQQKIYEKYDKNLAGEILQWVQNVTGQSFDTQG 51
>AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin protein
4 protein.
Length = 154
Score = 85.8 bits (203), Expect = 2e-17
Identities = 43/82 (52%), Positives = 54/82 (65%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWE 461
LKDG LCKL N I +KKI F C+ENIN F AAR LGV +ETFQ+VDL++
Sbjct: 58 LKDGQRLCKLVNAIKAGSVKKIMKPISNFNCLENINQFSTAARSLGVKDEETFQSVDLFD 117
Query: 462 RQNLNSVVICLQSLGRRLEPTG 527
++L SV + LQSL R++E G
Sbjct: 118 GRDLFSVTVTLQSLARKVEKLG 139
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 279 MLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQLGVPAQETFQTVDL 455
+LKDG +LCKL + P+ N MAF MENI+ FL AA+Q GV FQTVDL
Sbjct: 58 LLKDGVMLCKLIEKLDPSCRVVYNKKPKMAFPMMENISNFLAAAKQFGVMEISCFQTVDL 117
Query: 456 WERQNLNSVVICLQSL 503
+E + V+ CL+ L
Sbjct: 118 YENKQCYKVIECLRLL 133
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 128 NRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE 241
N G + E Q+K ++++ E A E L+WI +TGE
Sbjct: 3 NHGPSYGLSRELQKKNDARFVLEEAIEVLKWIENVTGE 40
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 282 LKDGTLLCKLANNIHPNMIKKINT--SSMA-FKCMENINAFLEAARQLGVPAQETFQTVD 452
L DG LCK N +HP I ++ SS+A + N++ FL+ R++GVP +D
Sbjct: 548 LSDGQELCKFINKLHPESISLASSTDSSIATTRSKMNVDRFLQYCRKIGVPETTLCSQMD 607
Query: 453 LWERQNLNSV 482
+ ++N V
Sbjct: 608 IISKRNPQKV 617
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 38.7 bits (86), Expect = 0.003
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +3
Query: 279 MLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAF-LEAARQLGVPAQETFQ 443
+L+DG LLC+LAN + PN I KKI ++ F C NIN F + + + F
Sbjct: 35 VLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDADLFT 94
Query: 444 TVDLWERQNLNSVVICLQSLGRRLE 518
DL+ V+ L L E
Sbjct: 95 AEDLYYMNGFQKVLKTLSFLSHTKE 119
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 38.7 bits (86), Expect = 0.003
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +3
Query: 279 MLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAF-LEAARQLGVPAQETFQ 443
+L+DG LLC+LAN + PN I KKI ++ F C NIN F + + + F
Sbjct: 67 VLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDADLFT 126
Query: 444 TVDLWERQNLNSVVICLQSLGRRLE 518
DL+ V+ L L E
Sbjct: 127 AEDLYYMNGFQKVLKTLSFLSHTKE 151
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 38.7 bits (86), Expect = 0.003
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +3
Query: 279 MLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAF-LEAARQLGVPAQETFQ 443
+L+DG LLC+LAN + PN I KKI ++ F C NIN F + + + F
Sbjct: 67 VLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDADLFT 126
Query: 444 TVDLWERQNLNSVVICLQSLGRRLE 518
DL+ V+ L L E
Sbjct: 127 AEDLYYMNGFQKVLKTLSFLSHTKE 151
>AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA
transcription factor EGL-18A protein.
Length = 358
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 159 KPRERSTANTARSWP--TSPWNGFG*SPANQRTPRGYGQLLRMLK 287
KP+ERS A P ++ NGF P N P G QLL M++
Sbjct: 106 KPKERSPPAAASPLPDFSNLMNGFMFDPLNMSNPNGMMQLLSMVQ 150
>AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like
transcription factorELT-5 protein.
Length = 376
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 159 KPRERSTANTARSWP--TSPWNGFG*SPANQRTPRGYGQLLRMLK 287
KP+ERS A P ++ NGF P N P G QLL M++
Sbjct: 106 KPKERSPPAAASPLPDFSNLMNGFMFDPLNMSNPNGMMQLLSMVQ 150
>AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying
defective protein 18 protein.
Length = 376
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 159 KPRERSTANTARSWP--TSPWNGFG*SPANQRTPRGYGQLLRMLK 287
KP+ERS A P ++ NGF P N P G QLL M++
Sbjct: 106 KPKERSPPAAASPLPDFSNLMNGFMFDPLNMSNPNGMMQLLSMVQ 150
>U88170-3|AAB42247.1| 338|Caenorhabditis elegans Hypothetical
protein C10G11.7 protein.
Length = 338
Score = 27.5 bits (58), Expect = 6.6
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = +3
Query: 240 NQRTPRGYGQLLRMLKDGTLLCKLANNIHPNMIK----KINTSSMAFKCME--NINAF-L 398
+Q T R Q + KDG +L KLAN + P ++ + N + A K ++ NI+AF
Sbjct: 149 DQATTRN--QFIGFFKDGDVLAKLANALEPGAVEVAAAEENADAAAQKEVQKKNIDAFGA 206
Query: 399 EAARQLGVPA 428
A + LG A
Sbjct: 207 WAQKTLGTEA 216
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 144 QDLQLKPRERSTANTARSWPTSPW 215
++L PR R TANT RS +SPW
Sbjct: 97 EELNFSPR-RLTANTTRSPVSSPW 119
>AF024502-7|AAB70377.3| 352|Caenorhabditis elegans Hypothetical
protein M151.6 protein.
Length = 352
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = -2
Query: 216 SKDSWASSSLYLLLIFLWASAANPDL--VARLFAISN**QFNK--LFK*ITDTVEGEVTV 49
+KDS SS + LL+ W +NP L + LF+ +N + + +F ITD + EV
Sbjct: 262 TKDSQFSSKDFNLLLKNWLRGSNPYLLNIVMLFSEANENRLVETIIFDGITDCIALEVQG 321
Query: 48 YRM*TGRRVNGTR 10
+ T + +GT+
Sbjct: 322 MKQFTVEKHDGTK 334
>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 352 VLIFLIMFGWMLLASLHRRVPSLSIRRSCPYPLGVLWFAGDHPNPFQGLV 203
+++ L++FG +L+A L LS RR PYP+G F G +P Q V
Sbjct: 1101 IVVILVVFG-VLIAGL----AVLSKRRELPYPIGK--FIGRRNDPNQPTV 1143
>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical protein
T04A11.3 protein.
Length = 1014
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 352 VLIFLIMFGWMLLASLHRRVPSLSIRRSCPYPLGVLWFAGDHPNPFQGLV 203
+++ L++FG +L+A L LS RR PYP+G F G +P Q V
Sbjct: 907 IVVILVVFG-VLIAGL----AVLSKRRELPYPIGK--FIGRRNDPNQPTV 949
>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 352 VLIFLIMFGWMLLASLHRRVPSLSIRRSCPYPLGVLWFAGDHPNPFQGLV 203
+++ L++FG +L+A L LS RR PYP+G F G +P Q V
Sbjct: 1101 IVVILVVFG-VLIAGL----AVLSKRRELPYPIGK--FIGRRNDPNQPTV 1143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,469
Number of Sequences: 27780
Number of extensions: 305605
Number of successful extensions: 858
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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