Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20846
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47500.1 68415.m05929 kinesin motor protein-related                 42   4e-04
At3g10310.1 68416.m01237 kinesin motor protein-related similar t...    37   0.010
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse...    36   0.013
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    33   0.093
At1g09170.1 68414.m01024 kinesin motor protein-related similar t...    33   0.16 
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    32   0.22 
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    32   0.22 
At5g41310.1 68418.m05020 kinesin motor protein-related                 31   0.50 
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    31   0.66 
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    30   0.87 
At4g15830.1 68417.m02408 expressed protein                             30   0.87 
At3g02140.1 68416.m00182 expressed protein                             29   1.5  
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    29   2.0  
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina...    29   2.0  
At3g32270.1 68416.m04114 hypothetical protein similar to putativ...    29   2.7  
At4g04920.1 68417.m00715 expressed protein                             27   6.1  
At2g20020.1 68415.m02340 expressed protein                             27   6.1  

>At2g47500.1 68415.m05929 kinesin motor protein-related 
          Length = 974

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
 Frame = +3

Query: 282 LKDGTLLCKLANNIHPNMIKKINTSSM------------AFKCMENINAFLEAARQLGVP 425
           L+ G +LCK+ N + P  + K+  S              AF+  EN+  FL A +++G P
Sbjct: 79  LRSGIILCKVLNKVQPGAVSKVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP 138

Query: 426 AQETFQTVDLWERQNLNSVVICLQSL 503
              TF+  DL +  N + VV C+ ++
Sbjct: 139 ---TFEASDLEQGGNASRVVNCVLAI 161


>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
           carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
          Length = 897

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
 Frame = +3

Query: 267 QLLRMLKDGTLLCKLANNIHPNMIKKI--NTSSM--------AFKCMENINAFLEAARQL 416
           + +  L++G +LC   N IHP  + K+  N S +        A++  EN+  FL A   L
Sbjct: 46  EFISCLRNGMILCNAINKIHPGAVSKVVENYSYLNGEYQLPPAYQYFENVRNFLVALETL 105

Query: 417 GVPAQETFQTVDLWERQNLNS 479
            +P    F+  DL E+ NL S
Sbjct: 106 RLPG---FEASDL-EKDNLES 122


>At5g27000.1 68418.m03221 kinesin motor protein-related
           non-consensus AT donor splice site at exon 12;
           non-consensus AC acceptor splice site at exon 13
          Length = 987

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
 Frame = +3

Query: 282 LKDGTLLCKLANNIHPNMIKKI---------NTSSMAFKCMENINAFLEAARQLGVPAQE 434
           L+ G +LC + N ++P  + K+           +  AF+  ENI  FL A  ++G+P   
Sbjct: 79  LRSGIVLCNVLNKVNPGSVSKVVEAPDDVADGAALSAFQYFENIRNFLVAIEEMGLP--- 135

Query: 435 TFQTVDLWERQNLNSVVICLQSL 503
           +F+  D+ +      +V C+ +L
Sbjct: 136 SFEASDMEKGGKSIRIVNCILAL 158


>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 270 LLRMLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 419
           L  + KDG LLCKL N   P  I  + INT SM   ++  EN    L +A+ +G
Sbjct: 157 LFEVAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIG 210


>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
           GB:AAB61066
          Length = 1010

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
 Frame = +3

Query: 282 LKDGTLLCKLANNIHPNMIKKI------------NTSSMAFKCMENINAFLEAARQLGVP 425
           L+ G LLC + N + P  + K+              +  AF+  EN+  FL    ++G+P
Sbjct: 89  LRSGILLCNVLNRVKPGAVPKVVEAPNDPLVNQDGAALSAFQYFENLRNFLVFVEEMGIP 148

Query: 426 AQETFQTVDLWERQNLNSVVICLQSL 503
              TF+  D  +      +V C+ +L
Sbjct: 149 ---TFEVSDFEKGGKSARIVECVLAL 171


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 267 QLLRMLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 419
           QL  ++KDG LLCKL N   P  I  + INT  +   ++  EN    L +A+ +G
Sbjct: 155 QLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVG 209


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 270 LLRMLKDGTLLCKLANNIHPNMI--KKINTSS--MAFKCMENINAFLEAARQLG 419
           L  ++KDG LLCKL N   P  I  + INT      ++  EN++  L +A+ +G
Sbjct: 149 LFDLVKDGVLLCKLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIG 202


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 267 QLLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQT 446
           +L   L DGT+LC L N + P  ++     S    C+ NI  FL A  ++ +P  E+ + 
Sbjct: 67  ELRACLVDGTVLCNLLNQLSPGSMRM--GGSFEPGCV-NIERFLAAMDEMTLPRFESLKA 123

Query: 447 V 449
           +
Sbjct: 124 L 124


>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +3

Query: 279 MLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 419
           ++KDG LLCKL N   P  I  + INT      ++  EN+   L +A+ +G
Sbjct: 158 LVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIG 208


>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 270 LLRMLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 419
           L  ++KDG LLCKL N   P  I  + INT  +   ++  EN    L +A+ +G
Sbjct: 157 LYELVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVG 210


>At4g15830.1 68417.m02408 expressed protein
          Length = 296

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -1

Query: 517 SSLLPSDCKQITTELRFCLSHRSTV*KVSCAGTPNCLAASRKALIFSMHLKAIDDVLIFL 338
           S LLP   K I   ++   + RS + K S     +   A  + L+   HLK++DD+L+ L
Sbjct: 94  SLLLPILEKLIVVMVKAMKNPRSALCKTSIMTCSDIFTAYGEKLLEGPHLKSMDDLLLQL 153

Query: 337 IM 332
           +M
Sbjct: 154 LM 155


>At3g02140.1 68416.m00182 expressed protein
          Length = 319

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 329 EHDQKDQHIVDGLQVHGEYQRFPRSRK 409
           E D+KD  +  GL ++G++   PRSRK
Sbjct: 57  EEDEKDVELTLGLSLNGQFGTDPRSRK 83


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 267 QLLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQE 434
           +L   L+DGT+LC L N + P  ++   +   A      I  FL A  ++ +P  E
Sbjct: 66  ELRACLRDGTVLCSLLNQLSPGSMRMGGSFEPA---SVKIERFLTAMDEMALPRFE 118


>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1064

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 267 QLLRMLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQE 434
           +L   L+DGT+LC L N + P  ++   +   A      I  FL A  ++ +P  E
Sbjct: 66  ELRACLRDGTVLCSLLNQLSPGSMRMGGSFEPA---SVKIERFLTAMDEMALPRFE 118


>At3g32270.1 68416.m04114 hypothetical protein similar to putative
           replication protein A1 GB:AAC95163 GI:4006821 from
           [Arabidopsis thaliana]
          Length = 209

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -1

Query: 493 KQITTELRFCLSHRSTV*KVSCAGTPNCLAASRKALIFSMHLKAIDDVLIFLIMFGWML 317
           + +  +LR C   ++   K++C     CLA+ ++AL FS +  ++   +I  ++  W L
Sbjct: 144 QNVVNDLRICFKLKN---KINCV--LECLASGKQALDFSQNYHSLGGGVIVAVLGWWKL 197


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 120 WQTTERPNQDLQLKPRERSTANTARSWPTSPWNGF 224
           W+ T  P   LQ  P+  + +    S  +S W GF
Sbjct: 347 WEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGF 381


>At2g20020.1 68415.m02340 expressed protein
          Length = 701

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 117 KWQTTERPNQDLQLKPRERSTANTARSWPTSPWNGFG*SPANQRTPRGY 263
           K+  TE P     LK RE + A    +    PW G    P +Q+TPR +
Sbjct: 154 KYSYTETPKVK-PLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREF 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,267,784
Number of Sequences: 28952
Number of extensions: 289011
Number of successful extensions: 825
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)