Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20845
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    31   0.13 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    27   3.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   8.3  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -2

Query: 617 ILPECIVFYSSYYSFKGIYHSKHHFFIKIINHCIC-----FSLKFIVLVISC 477
           I  E +   S Y S      S+ HF    +NH +C     F + ++VL++ C
Sbjct: 120 IASEMLEMGSHYLSITAFIESRSHFEYGFVNHALCAALRKFVMDYVVLIMQC 171


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 543 LYQDHKSLYLLLIKIYSACYQLQERVLTSFR-FAAPKNKLQEPIKASNNF 397
           L +D+ ++ +   +   A YQL E     F+      N+L EP+K S NF
Sbjct: 69  LLRDNYNVLVDYARNQDAFYQLLENSRHDFKELVLHTNQLYEPVKRSQNF 118


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = +2

Query: 65  IIKIYTEMDIIFRKINSIEHFDIICNEIINNMYTRSDEKISEIVENNVIQTAKQELRTI 241
           I+    + DII RK N + + +++   II+ ++   DE+   ++E+ V +  + +  T+
Sbjct: 625 IVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHDER-GPVLESIVARIFRHQEETL 682


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 157  VVYYFVTYYIKMFYRIYFPEYNIHFSIYF 71
            V + F  Y I  FY I FP Y IH S+ F
Sbjct: 999  VKHDFYAYAIG-FYSISFPMYAIHASVKF 1026


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,252
Number of Sequences: 5004
Number of extensions: 57050
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)