Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20845
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)                      30   2.2  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)                   28   6.7  
SB_17745| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  

>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 585 LLLFQGNLSF*APFLYQDHKSLYLLLIKIYSACY 484
           +L+F   LSF A F + D K LY L   IYS  Y
Sbjct: 73  ILIFYAVLSFTAMFAFGDLKDLYTLNFVIYSNAY 106


>SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)
          Length = 335

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 160 HVVYYFVTYYIKMFYRIYFPEYNIHFSIYFDN 65
           H  YY+  YY   +Y  Y+  Y  ++  Y+D+
Sbjct: 264 HSYYYYYYYYYYYYYYYYYYYYYYYYYYYYDD 295


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 160 HVVYYFVTYYIKMFYRIYFPEYNIHFSIYFDNTQLVRFY 44
           H  YY+  YY   +Y  Y+  Y  ++  Y+ +     +Y
Sbjct: 101 HAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYY 139


>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
          Length = 1195

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 228 SCFAV*ITLFSTISEIFSSLRVYMLFIISLHIISKCSIEFIF 103
           S   V  +L ST++ +  SL     F+ +L     CSIEF F
Sbjct: 633 SVLRVVYSLLSTLAHLALSLSFLSFFLSALSFCINCSIEFTF 674


>SB_17745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 385 CSYGEVITSFDWLLKLVLGSSESKTSQYPLLQLITSTIN 501
           C++G  IT FDW     L  +E K ++  L +++TS I+
Sbjct: 312 CAFGRWITGFDWGCVTNLTCTEDKLNE--LYKILTSAID 348


>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 599 VFYSSYYSFKGIYHSKHHFF 540
           VFYSS+Y F+ +   KH+F+
Sbjct: 235 VFYSSFYVFQKVTVKKHYFY 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,857
Number of Sequences: 59808
Number of extensions: 342664
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)