Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20845
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   5.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 337 KKKLSDIVLMSIYHHNCS 390
           KK +SD+V+  + H N S
Sbjct: 217 KKAMSDLVICKLSHSNAS 234


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 337 KKKLSDIVLMSIYHHNCS 390
           KK +SD+V+  + H N S
Sbjct: 217 KKAMSDLVICKLSHSNAS 234


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 611 PECIVFYSSYYSFKGIYHSKH 549
           P C   +S YYS K  +  KH
Sbjct: 9   PYCRRNFSCYYSLKRHFQDKH 29


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 400 LPHTNNCDDKYSLVQYLTI 344
           L +TN  D  YS   YLT+
Sbjct: 365 LDNTNTNDQDYSSQNYLTV 383


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 597 YYTFW*NEELKHNSW 641
           Y   W N +LK+N+W
Sbjct: 261 YLIKWKNWDLKYNTW 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,364
Number of Sequences: 438
Number of extensions: 4210
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)