Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20844
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    26   4.2  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   5.6  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.7  

>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +3

Query: 117 DRDSDTAENECKHIRRKMFKTGSKRRRVSSKEFQQPR*LLEGRSS*MGIEEAEPIVIDEL 296
           +RDS  ++N C+ +R  ++   ++  RV + + Q  R  LE   + + +E A+P  ++  
Sbjct: 181 ERDSAISKNFCEQVRAVLYPRFAEAHRVKA-DVQDKRLQLE--MAKLDVESAKPENLEHC 237

Query: 297 SIALGAGPD 323
             A+ +  D
Sbjct: 238 KSAVRSAED 246


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 108 VVFDRDSDTAENECKHIRRKMFKTGSKRRRVSSKEF 215
           ++F  D  TAEN  K ++ +    GSK + ++  +F
Sbjct: 730 ILFASDGGTAENVAKRLQNRASARGSKCKIMAMDDF 765


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 171 TFSSEYVCIRFQRYHCRDQKQRHEFMH 91
           T    +VCI  +R+  RD  ++HE +H
Sbjct: 447 TSEKPFVCICGKRFSRRDNLRQHERLH 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,803
Number of Sequences: 5004
Number of extensions: 53400
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)