Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20844
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0428 + 20692616-20692629,20692895-20693717 33 0.15
11_01_0482 - 3714442-3715593 31 1.1
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 2.5
07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164 29 4.4
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743... 28 5.8
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 5.8
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 28 7.6
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 28 7.6
01_01_1181 + 9410310-9411329 28 7.6
>06_03_0428 + 20692616-20692629,20692895-20693717
Length = 278
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 541 LGLDAMVFAPVSPPPEARTSSRTPEERYRARALM 440
+ LDA+V AP SPPP +P E RA AL+
Sbjct: 149 MALDAVVPAPPSPPPPLMPPQASPSEAARAHALV 182
>11_01_0482 - 3714442-3715593
Length = 383
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 411 QFQLTLYGPHISARA-RYRSSGVLLLVRASGGGD 509
+ + T Y PH SA+A + R LLVR GGGD
Sbjct: 154 EVEKTAYRPHQSAKAHQLREGSTGLLVRRGGGGD 187
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 321 DGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYGPHISARARYRSS 470
DG +F+++HASG + + + + + DL F + P R R + S
Sbjct: 197 DGATESFEELHASGNTPVYVLHPKQDLHGLGFDPFKHAPEFKDRKRLQKS 246
>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
Length = 105
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 314 WSRRLQSNLQRHPCVRSIEHDHH*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSS 478
+S R + +L+R + SI+ + + V RDP P+ A + + PLL+ +
Sbjct: 49 FSSRTKGSLKRRTALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLKDN 103
>06_03_0859 -
25473784-25473798,25473862-25473923,25474251-25474345,
25475718-25475831,25476490-25476695,25476834-25476959,
25479516-25480178
Length = 426
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 416 PADAVRTSHQRPRSVPLLRSSAAGP 490
PA + R+S PR +PLL S A+GP
Sbjct: 58 PASSRRSSGPLPRPLPLLPSPASGP 82
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 309 GAGPDGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYG 434
GAG T A+ S+ + N R D+ T+ +QL YG
Sbjct: 139 GAGRGRGSKTVDQTRATSTSSAVVANGRHDILTNMYQLNPYG 180
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 386 RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGPSFRRRRYW 514
RQ +RD S + R Q +V LRS GPS R YW
Sbjct: 435 RQQAARDTSSGSTLRRRPRQFGGNVHSLRSDDQGPSDDRNVYW 477
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 441 ISARARYRSSGVLLLVRASGGGDTGANTMASRPRYTSAALRTNA 572
++AR R + G +ASG TG+ + R R +AA+R +A
Sbjct: 114 MTARQRLDAGGRSSATKASGAATTGSASSRRRARRAAAAVRHSA 157
>01_01_1181 + 9410310-9411329
Length = 339
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +3
Query: 423 TLYGPHISARARYR-------SSGVLLLVRASGGGDTGANTMASRPRYTSAALRTNAT 575
T + H++ + +YR S V +L+ A G +T A SRP +SAA NA+
Sbjct: 127 TFHANHVNIQRQYRQDKYEKYSKLVSVLMEAQGEDETLAENHTSRPTGSSAAPEANAS 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,989,578
Number of Sequences: 37544
Number of extensions: 380983
Number of successful extensions: 1215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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