Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20844
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)             29   4.5  
SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08)              28   5.9  
SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)            28   5.9  
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                28   7.8  

>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 386 RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGPSFR 499
           R+V    PSVP+    T H +PR V L+     G   R
Sbjct: 421 RRVPLTSPSVPSGTTSTDHSQPRRVQLVTMPVPGQMVR 458


>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
          Length = 762

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -1

Query: 647 SQRPS*CPLRRNLASAVAVSGKFVRRVRTERRGSIPWP*RH 525
           ++R +   ++R++ S  + SGK VRRV T+R G I +   H
Sbjct: 329 AERQNAIRVKRSMRSRSSSSGKTVRRVATKRAGLISYVSSH 369


>SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 255 MGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 389
           + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 255 LSMEDSLQCPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 296


>SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08)
          Length = 253

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 255 MGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 389
           + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 128 LSMEDSLQCPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 169


>SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)
          Length = 262

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 ISARARYRSSGVLLLVRASGGGDTGANTMASRPRYT 548
           I +R RYR   +   +R S G DT   TM  R RY+
Sbjct: 92  IESRLRYRHGPIQSRLRCSYGHDTVTVTMQLRSRYS 127


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 157 ICLHSFSAVSLSRSKTTPRIYAFL-FF*PIKI*KQKGRAMFFFFFNSR 17
           IC   FSA  L RS +TP I A L +  P+         +FFFF++ R
Sbjct: 101 ICTLLFSAFRLERSPSTPPITAPLSYLPPMSPSVGVLITLFFFFYSDR 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,055,885
Number of Sequences: 59808
Number of extensions: 402614
Number of successful extensions: 1075
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)