Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20844
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    37   2e-04
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 273 EPIVIDELSIALGAGPDGYRATFKDIHASGAS-NMTITNVRSDLETHQFQLTLYGPHISA 449
           EP+ +D + I    G    R  +K+I   G + N+ I N   D +        Y P +  
Sbjct: 68  EPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDF 127

Query: 450 RARYRSSGVLLLVRASGGG 506
            A Y+  G +LL+   G G
Sbjct: 128 VADYKIEGKVLLLPVRGAG 146



 Score = 29.5 bits (63), Expect = 0.030
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 563 YERDGRTYLKLQQLKLDFSVKGIKMGVENL 652
           YE++G TYL++++  + F+   +K+  ENL
Sbjct: 166 YEKNGETYLRIKKHAVKFNPAKVKLRFENL 195


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 587 LKLQQLKLDFSVKGIKMGVENLDN 658
           +K+Q++ +DF V  +  GV N+++
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNVNS 509


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 587 LKLQQLKLDFSVKGIKMGVENLDN 658
           +K+Q++ +DF V  +  GV N+++
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNVNS 509


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 519 NTMASRPRYTSAALRTNAT 575
           N+ AS PRY SAA  ++ +
Sbjct: 821 NSPASSPRYLSAAATSSTS 839


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,182
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)