Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20844
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13980.1 68416.m01765 expressed protein                             29   2.8  
At5g63320.1 68418.m07946 expressed protein                             29   3.6  
At5g38920.1 68418.m04707 hypothetical protein                          27   8.4  
At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate synth...    27   8.4  
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica...    27   8.4  

>At3g13980.1 68416.m01765 expressed protein
          Length = 357

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
 Frame = +2

Query: 311 SWSRRLQSNLQRHPCVRSIEHDHH*RQVGSRDPSVPADAVRTS--HQRPRSVPLLRSSAA 484
           +W +   S+  R+P   S   D   R +    P  P ++++    H + R+  L      
Sbjct: 4   TWEKPKSSSHHRNPSFSSTLLDQIYRSIDDSSPPPPLESIKKKKHHHQQRNASLHEDREI 63

Query: 485 GPSFRRRRYWGEYHGVKAKVYF 550
            P + RR    ++   + K  F
Sbjct: 64  SPIYHRRSIAADFERSRRKTDF 85


>At5g63320.1 68418.m07946 expressed protein
          Length = 569

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 535 LDAMVFAP--VSPPPEARTSSRTPEERYRARAL 443
           +DA+V  P   + PPE + S  +P++RYRA  L
Sbjct: 40  MDAVVLVPDEETAPPERQISPDSPDKRYRAAFL 72


>At5g38920.1 68418.m04707 hypothetical protein
          Length = 192

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 424 VSWN*WVSRSDLTLVMVMFDAPDAWMSLKVA 332
           + W  W +R+DL      FDAPD  + ++ A
Sbjct: 24  ILWRLWKNRNDLVFKGKQFDAPDMELGMQNA 54


>At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthase from Malus x domestica, GI:1658062
           [U73816], Pyrus pyrifolia GI:4586411
          Length = 447

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 389 QVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGPSFRRRRYWGEYHGVK 535
           Q+G  +  V  D + T  ++      +  S   P FR    + +YHG+K
Sbjct: 56  QMGLAENQVSFDLLETYLEKKNPEGSMWGSKGAPGFRENALFQDYHGLK 104


>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
           to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
           thaliana)
          Length = 616

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 489 RASGGGDTGANTMASRPRYTSAALR 563
           R  GGGD G N+ A RP   S+ L+
Sbjct: 44  RVGGGGDGGRNSNAERPIRVSSLLK 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,862
Number of Sequences: 28952
Number of extensions: 287327
Number of successful extensions: 814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)