Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20843
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 144 1e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 144 1e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 143 3e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.52
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 29 0.90
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.6
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 25 8.4
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 8.4
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 8.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.4
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 25 8.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (349), Expect = 1e-35
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPD
Sbjct: 92 VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKFE 508
PLIKVND+I+L++ T KI FIKF+
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFD 176
Score = 142 bits (343), Expect = 6e-35
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ Q
Sbjct: 8 HLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
RLIKVDGKVRTD T+P GFMDV+S+ +
Sbjct: 68 RLIKVDGKVRTDSTFPTGFMDVISVEK 94
Score = 105 bits (252), Expect = 7e-24
Identities = 45/70 (64%), Positives = 60/70 (85%)
Frame = +1
Query: 523 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 702
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 703 KGIRLTIAEE 732
KG++L+I EE
Sbjct: 242 KGVKLSITEE 251
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (349), Expect = 1e-35
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPD
Sbjct: 92 VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKFE 508
PLIKVND+I+L++ T KI FIKF+
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFD 176
Score = 140 bits (339), Expect = 2e-34
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ Q
Sbjct: 8 HLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
RLI+VDGKVRTD T+P GFMDV+S+ +
Sbjct: 68 RLIQVDGKVRTDSTFPTGFMDVISVEK 94
Score = 106 bits (254), Expect = 4e-24
Identities = 45/70 (64%), Positives = 60/70 (85%)
Frame = +1
Query: 523 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 702
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKG 241
Query: 703 KGIRLTIAEE 732
KG++L+I EE
Sbjct: 242 KGVKLSITEE 251
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 143 bits (346), Expect = 3e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPD
Sbjct: 92 VDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKFE 508
PLIKVND+I+L++ T KI FIKF+
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFD 176
Score = 141 bits (341), Expect = 1e-34
Identities = 62/85 (72%), Positives = 71/85 (83%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ Q
Sbjct: 8 HLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
RLIKVDGKVRTD T+P GFMDV+S+
Sbjct: 68 RLIKVDGKVRTDSTFPTGFMDVISV 92
Score = 105 bits (252), Expect = 7e-24
Identities = 45/70 (64%), Positives = 60/70 (85%)
Frame = +1
Query: 523 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 702
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 703 KGIRLTIAEE 732
KG++L+I EE
Sbjct: 242 KGVKLSITEE 251
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.52
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 687 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 562
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/86 (24%), Positives = 34/86 (39%)
Frame = -1
Query: 315 WIVNLPLTS*IRRNSSLVFSMRQHP*IQLDK*GQS*LSHQPL*GVVSQFSGLRFRSKHTS 136
W+V + SL+ P ++L K G + + G + + L ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296
Query: 135 DDSSGKSPGASTRATCGDRLTVSVHT 58
SP AST ++ V HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 442 QSQRFHPVRHCNYED 486
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -1
Query: 567 HDGAHTPQVTASRDHTQVPGSNLMKSIIFVVAMSNWME 454
+D + P V H PG + K I A SNW +
Sbjct: 80 NDASFEPTVPIYESHVSAPGISKKKKNIKDTAGSNWFD 117
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 236 SSWISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 81
SS + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +3
Query: 153 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCFV*SMMLRADSQSTV 320
G+ + + +++R I V+ ++ P +P + +SLR +C+ S++L S +
Sbjct: 657 GSPLDRELQRRSIAVNLCQKSVPLFPTTLGEALSLREDKDCYTMSLLLDVSSTGKI 712
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 337 SLLRGDTVDCESALNIID*TKQ 272
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +2
Query: 233 WIYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK-RVATGPKNVPYLVTHD 409
W C I + F + G + +I K LC V T PKN Y+V
Sbjct: 32 WCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASG 91
Query: 410 GR 415
GR
Sbjct: 92 GR 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,508
Number of Sequences: 5004
Number of extensions: 72583
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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