Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20843
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 2e-40
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 5.1
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 6.8
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 163 bits (395), Expect = 2e-40
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQ
Sbjct: 432 HMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQ 491
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
RLIK+DGKVRTD TYPAGFMDVV++
Sbjct: 492 RLIKIDGKVRTDTTYPAGFMDVVTI 516
Score = 133 bits (322), Expect = 1e-31
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G K VPY+VTHD RTIRYPD
Sbjct: 516 IDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPD 575
Query: 434 PLIKVNDSIQLDIATTKIMDFIKFEPG 514
P IKVND++ +DI T K++D+IKF+ G
Sbjct: 576 PNIKVNDTVVIDIKTGKVIDYIKFDTG 602
Score = 125 bits (301), Expect = 4e-29
Identities = 51/74 (68%), Positives = 64/74 (86%)
Frame = +1
Query: 511 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 690
GN+ M+ GGRN+GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+S
Sbjct: 602 GNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVS 661
Query: 691 LPRGKGIRLTIAEE 732
LP+GKG+RL+IAEE
Sbjct: 662 LPKGKGVRLSIAEE 675
>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 854
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 531 RDHTQVPGSNLMKSIIFVVAMSNWMESLTLISG 433
RD+ ++ G L K IIF++ + +++ S LISG
Sbjct: 180 RDYLRIKGRRLQKGIIFILILKDYL-SYHLISG 211
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +2
Query: 125 EES--SEVCFDRKRSPENCE 178
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = -1
Query: 714 ADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTA 535
A+A QR+ RLR L D + P + R V+ +E A + L AH + +
Sbjct: 1184 AEAWTQEQREARLRELKDKLVALDPADKDQKRSVM----LEAAAIKLVSRK-AHLAK--S 1236
Query: 534 SRDHTQVPGSNLMKSII 484
D ++VP +M S+I
Sbjct: 1237 REDGSEVPRDEVMISLI 1253
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 552 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 725
C H H + + + H +H LH TH+ E + R G G R PH+R
Sbjct: 18 CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74
>SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 570 GHDGAHTPQVTASRDHTQVPGSNLMKSIIFVVAMSNWMESL 448
G + H +A HT VP SN S FV+ ++ ++ SL
Sbjct: 872 GREDYHAEDPSARLRHTPVPESNSAWSTSFVIGVAGFLVSL 912
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 728
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -3
Query: 202 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 86
PS++ F +FRT FP + RF R+ IT ++LW
Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,695,023
Number of Sequences: 59808
Number of extensions: 623666
Number of successful extensions: 1854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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