Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20843
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   128   4e-30
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    39   0.004
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    31   0.84 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  128 bits (309), Expect = 4e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ Q
Sbjct: 7   HLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQ 66

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278
           R+++VDGKVRT   +P GFMDVV++ R    F
Sbjct: 67  RVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  122 bits (293), Expect = 3e-28
 Identities = 55/87 (63%), Positives = 66/87 (75%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPD
Sbjct: 91  IERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPD 150

Query: 434 PLIKVNDSIQLDIATTKIMDFIKFEPG 514
           P +KVND+I  +I+T KI D +KFEPG
Sbjct: 151 PHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score =  115 bits (277), Expect = 3e-26
 Identities = 52/74 (70%), Positives = 62/74 (83%)
 Frame = +1

Query: 511 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 690
           GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +S
Sbjct: 177 GNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVS 236

Query: 691 LPRGKGIRLTIAEE 732
           LP G GIRL+IAEE
Sbjct: 237 LPTGAGIRLSIAEE 250


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 722
           HH    E      H  H G HGTH  H          GH G  H A A  GH  HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +3

Query: 549 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 722
           A  HH    E      H  H G HGTH  H          GH G  H A A  GH   H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEH 522



 Score = 35.5 bits (78), Expect = 0.039
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 722
           HHR   E        AH G HGTH  H  E   H+   H G H +     H P H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAH 454



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
 Frame = +3

Query: 528 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 698
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H  A 
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702

Query: 699 RQGHPP---HHRRG 731
              H     HH  G
Sbjct: 703 HGHHDDKENHHHHG 716



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +3

Query: 597 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHH 722
           H AH   HG H RH  E    H+   H G H      GH   H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGHHGEH 432



 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQR----VHNRQGHEGVHLAAARQGHPPHH 722
           HH    E      H  H G HGTH  H  E       H   G  G H       H P H
Sbjct: 502 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAH 560



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +3

Query: 555 GHHRVPRETSRLLRHCAHQGLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHH 722
           GHH           H  H G HG H   H      H+  GH G H       H PHH
Sbjct: 588 GHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHH--GHHGAH-----HHHAPHH 637



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/55 (29%), Positives = 16/55 (29%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 722
           HH  P           H G HG H  H          GH G H       H P H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH 685



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRV---HNRQGHEGVHLAAARQGHPPHH 722
           HH  P        H +H   HG H  H         H   G  GVH      G+  HH
Sbjct: 567 HHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHH 624



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 555 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 686
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/55 (34%), Positives = 20/55 (36%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 722
           HH    E      H  H G HG+H  H      H   GH   H A A  GH   H
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGH---HESHGHG--HHAPAHHGHHGEH 609



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +3

Query: 603 AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 731
           AH G HG H  H      H   GH G H      GH   H  G
Sbjct: 559 AHHGHHGEH--HHAPAH-HGHHGHHGSH--GVHHGHHESHGHG 596



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
 Frame = +3

Query: 603 AHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHPPHH 722
           AH G HG H  H      H   G  H G H       H  HH
Sbjct: 622 AHHGHHGAHHHHAPHHEHHEHHGDHHHGSH-GVHHGHHGTHH 662


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 597 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHH 722
           HC   G HG H       R H   G  G      R GH  PPHH
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHH 402



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +3

Query: 597 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 722
           HC    G HG    H  + R  +R GH   H    R   PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 299 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 430
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 709 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 620
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 456  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 292
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,021,896
Number of Sequences: 27780
Number of extensions: 439297
Number of successful extensions: 1399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)