Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20843
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 147 8e-36
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 147 8e-36
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 147 8e-36
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.79
At1g29760.1 68414.m03639 expressed protein 31 0.79
At1g15780.1 68414.m01893 expressed protein 30 1.4
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.4
At5g63000.1 68418.m07904 expressed protein 29 3.2
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.2
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.2
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.2
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 4.2
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 28 5.6
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 7.3
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 28 7.3
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 27 9.7
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 27 9.7
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 27 9.7
At3g56260.1 68416.m06252 expressed protein 27 9.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 147 bits (356), Expect = 8e-36
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ Q
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68 RHIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 128 bits (308), Expect = 5e-30
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKFEPGTCV 523
PLIK ND+I+LD+ KI++FIKF+ G V
Sbjct: 152 PLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 118 bits (283), Expect = 5e-27
Identities = 51/74 (68%), Positives = 63/74 (85%)
Frame = +1
Query: 511 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 690
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 691 LPRGKGIRLTIAEE 732
LP+GKGI+LTI EE
Sbjct: 238 LPKGKGIKLTIIEE 251
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 147 bits (356), Expect = 8e-36
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ Q
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68 RHIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 127 bits (307), Expect = 7e-30
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKFEPGTCV 523
PLIK ND+I+LD+ KI++FIKF+ G V
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 118 bits (283), Expect = 5e-27
Identities = 51/74 (68%), Positives = 63/74 (85%)
Frame = +1
Query: 511 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 690
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 691 LPRGKGIRLTIAEE 732
LP+GKGI+LTI EE
Sbjct: 238 LPKGKGIKLTIIEE 251
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 147 bits (356), Expect = 8e-36
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ Q
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68 RHIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 127 bits (307), Expect = 7e-30
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKFEPGTCV 523
PLIK ND+I+LD+ KI++FIKF+ G V
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 118 bits (283), Expect = 5e-27
Identities = 51/74 (68%), Positives = 63/74 (85%)
Frame = +1
Query: 511 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 690
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 691 LPRGKGIRLTIAEE 732
LP+GKGI+LTI EE
Sbjct: 238 LPKGKGIKLTIIEE 251
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 106 KHSRNLWGPVDGLGAYTPPSLSNIHAL 26
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 217 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 125
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 705 LAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEG 589
L ARQ+ +L+ + D + +G VSRG+ H+++G
Sbjct: 865 LQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSMQG 903
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 671 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 576
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At5g63000.1 68418.m07904 expressed protein
Length = 201
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 624 SRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGSNLMKSIIF 481
+RGV DV NV GAG + A G P A R + GS L ++ F
Sbjct: 110 TRGVHDVFNVVGAGSATAAVFGLIMPGSLAWRARNVLLGSVLGATVCF 157
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 671 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 576
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 196 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 80
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 671 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 576
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 535 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 693
G NL + + + R P +V + HT A T NNVF G+GT + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 606 HQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 731
HQG+HG + H ++ + + H+G+H + GH H+ G
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGG 197
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 671 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 576
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 711 DALAARQRDVRLRALADYEHVVQPRGEGVSRG 616
+ LA QRDVRL L E V P E + G
Sbjct: 158 EVLAFIQRDVRLNGLRQVETPVSPEQEAIHHG 189
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 129 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 227
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 129 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 227
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 129 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 227
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 736
>At3g56260.1 68416.m06252 expressed protein
Length = 176
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 412 PHHPLSRPTYQSQRFHPVRHCNYEDYGLHQV*AGNLCMITGGRNLGRVGTI--VSRERHP 585
P H L + ++ P+ + NYE+ L LC GGR LG ++ V+R
Sbjct: 95 PPHSLKKRMSHDKK-SPLLYANYEEDELRSSPTSTLCCSNGGR-LGCSSSMGSVTRALFS 152
Query: 586 GSFDIVHIKDSTG 624
GS + + ++TG
Sbjct: 153 GSMEGMKRHETTG 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,162,532
Number of Sequences: 28952
Number of extensions: 412048
Number of successful extensions: 1214
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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