Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20841
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-27
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   9e-25
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              101   4e-22
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   2e-20
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   3e-18
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         83   2e-16
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         80   2e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          78   8e-15
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         72   4e-13
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         51   8e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.072
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.51 
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)                  28   6.3  

>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  120 bits (288), Expect = 1e-27
 Identities = 52/56 (92%), Positives = 55/56 (98%)
 Frame = +1

Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDV 675
           F DENFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL+GM+V
Sbjct: 124 FADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
 Frame = +2

Query: 251 SQGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPKTTENFFQL---- 379
           ++ P VT KV FD+ IG +  G I IGLF              +++  T   +F      
Sbjct: 20  AKDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCC 79

Query: 380 -AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERLKMKTSS*STMVLVGY 556
             +  +G GYK S FHRVI++FMIQ            +SIYG++   +      +   G 
Sbjct: 80  TIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFK---LQHYGA 136

Query: 557 LWLMQAKTQMDLNFS 601
            WL  A    D N S
Sbjct: 137 GWLSMANAGKDTNGS 151


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  110 bits (265), Expect = 9e-25
 Identities = 46/60 (76%), Positives = 53/60 (88%)
 Frame = +1

Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
           F+DENF LKHYG GWL MANAGK+TNGSQF+ITT+KT WLDG H  FGKVLEGMDVV+++
Sbjct: 105 FDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRI 164



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 41/80 (51%), Positives = 47/80 (58%)
 Frame = +2

Query: 266 VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 445
           VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +G GYK S FHRVIKNFM
Sbjct: 24  VTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFM 83

Query: 446 IQXXXXXXXXXXXXRSIYGE 505
           IQ             SIYG+
Sbjct: 84  IQGGDFTNKDGTGGYSIYGK 103


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  101 bits (243), Expect = 4e-22
 Identities = 45/60 (75%), Positives = 52/60 (86%)
 Frame = +1

Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
           FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT WLDG+HVVFG V+EG DVV+K+
Sbjct: 216 FEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKM 275



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 34/84 (40%), Positives = 45/84 (53%)
 Frame = +2

Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 442
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 443 MIQXXXXXXXXXXXXRSIYGERLK 514
           M Q            +SIYG + +
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFE 217


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 43/60 (71%), Positives = 48/60 (80%)
 Frame = +1

Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
           F DENF LKH G G LSMANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K+
Sbjct: 82  FADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKI 141



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/83 (44%), Positives = 44/83 (53%)
 Frame = +2

Query: 260 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 439
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 440 FMIQXXXXXXXXXXXXRSIYGER 508
           FM Q            +SIYG +
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAK 81


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/43 (93%), Positives = 42/43 (97%)
 Frame = +1

Query: 559 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVLEGMDVV+KL
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKL 43


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/52 (75%), Positives = 45/52 (86%)
 Frame = +1

Query: 532 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
           +H   G LSMAN+G +TNGSQFFITTV TP LDGRHVVFGKVL+GMDVV++L
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVREL 239


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = +1

Query: 508 FEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQK 684
           FEDE  + L+H     +SMANAG +TNGSQFFIT V TPWLD +H VFG+V++GMDV Q+
Sbjct: 14  FEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDVAQQ 73

Query: 685 L 687
           +
Sbjct: 74  I 74


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = +1

Query: 553 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKLR 690
           LSMANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K+R
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKMR 48


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 30/60 (50%), Positives = 43/60 (71%)
 Frame = +1

Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
           FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++V FG+V+EG++V+  L
Sbjct: 57  FEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGLNVLDVL 116


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 29/61 (47%), Positives = 38/61 (62%)
 Frame = +1

Query: 505 TFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQK 684
           TF DE F+ KH     LSMAN G +TNGSQFFI           HVVFG V++G ++V++
Sbjct: 36  TFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQGEELVRQ 85

Query: 685 L 687
           +
Sbjct: 86  I 86


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +1

Query: 499 W*TFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 660
           W   +DE   L     H   G +SMAN G ++NGSQFFI   K P LD ++ +FGK L
Sbjct: 285 WEELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
 Frame = +1

Query: 535 HYGAGWLSMANAG-KDTNGSQFFITTVKTPWLDGR-----HVVFGKVLEGMDVVQKL 687
           H   G L+MA    +D+  SQFFI      +LD       + VFGKV++GMDVV K+
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157



 Score = 34.3 bits (75), Expect = 0.096
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +2

Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 436
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +2

Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 427
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
          Length = 562

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 331 SNHNSTNIVITNLHVKAHLMSNFRSLGISSDLALAMNNKIPKAIVRVPMIKTSLVRFLAI 152
           +N+N+ N    N +      S FRS+   +D +    ++ P  + R P+   +  R LA+
Sbjct: 137 NNNNNNNNNNNNNNNNNEFNSTFRSIDWITDTSWLWKHRWPNVLARWPLTAVAQFRILAL 196

Query: 151 FTKF 140
              F
Sbjct: 197 AGNF 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,318,888
Number of Sequences: 59808
Number of extensions: 391163
Number of successful extensions: 639
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)