Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20841
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 107 5e-24
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 106 1e-23
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 103 1e-22
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 102 3e-22
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 99 2e-21
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 99 2e-21
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 97 1e-20
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 97 1e-20
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 92 3e-19
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 91 5e-19
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 90 1e-18
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 88 5e-18
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 88 5e-18
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 88 6e-18
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 85 3e-17
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 83 1e-16
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 83 2e-16
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 67 1e-11
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 55 4e-08
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 54 1e-07
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 52 4e-07
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 49 3e-06
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 44 1e-04
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 44 1e-04
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 38 0.005
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 38 0.005
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 38 0.005
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 37 0.011
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc... 36 0.019
At1g35240.1 68414.m04370 transcriptional factor B3 family protei... 28 5.1
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 107 bits (258), Expect = 5e-24
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F DENFKLKH G G+LSMANAG+DTNGSQFFITTV T WLDGRHVVFGKV+ GMDVV K+
Sbjct: 121 FADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKV 180
Score = 78.6 bits (185), Expect = 4e-15
Identities = 42/89 (47%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKF 421
++THKV FD++I G IV+GLFGKTVPKT ENF L +G G YKGS F
Sbjct: 32 EITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSF 91
Query: 422 HRVIKNFMIQXXXXXXXXXXXXRSIYGER 508
HR+I +FM+Q SIYGE+
Sbjct: 92 HRIIPSFMLQGGDFTHGNGMGGESIYGEK 120
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 106 bits (255), Expect = 1e-23
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F DENFKLKH G G LSMAN+G+DTNGSQFFITTV T WLDGRHVVFGKV++GMDVV K+
Sbjct: 118 FADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKI 177
Score = 81.0 bits (191), Expect = 7e-16
Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKF 421
+VTHKV FD++I + G +VIGLFGK VPKT ENF L +G G YKGSKF
Sbjct: 29 EVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKF 88
Query: 422 HRVIKNFMIQXXXXXXXXXXXXRSIYGER 508
HR+I +FMIQ SIYG++
Sbjct: 89 HRIIPSFMIQGGDFTHGNGMGGESIYGQK 117
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 103 bits (247), Expect = 1e-22
Identities = 46/60 (76%), Positives = 52/60 (86%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F DENFKLKH G G+LSMAN+G D+NGSQFFITTV T WLDG HVVFGKVL GM+VV+K+
Sbjct: 145 FADENFKLKHTGPGFLSMANSGPDSNGSQFFITTVTTSWLDGHHVVFGKVLSGMEVVRKI 204
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/88 (45%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Frame = +2
Query: 266 VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFH 424
VTHKV FD++I G I+IGLFG VPKT ENF L +G G +KGS FH
Sbjct: 57 VTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGVGNMGKPLYFKGSSFH 116
Query: 425 RVIKNFMIQXXXXXXXXXXXXRSIYGER 508
R+I FMIQ SIYG++
Sbjct: 117 RIIPGFMIQGGDFTRGDGRGGESIYGDK 144
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 102 bits (244), Expect = 3e-22
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +1
Query: 505 TFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQ 681
TF+DENFKL H G G LSMANAG +TNGSQFFI T+KT WLDGRHVVFG+V+EGM+VV+
Sbjct: 171 TFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVK 229
Score = 80.6 bits (190), Expect = 9e-16
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDN---IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 433
K+THKV FD+ +G+ G IVIGL+G VP+T ENF L +G GYKGS FHRVI
Sbjct: 87 KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVI 146
Query: 434 KNFMIQXXXXXXXXXXXXRSIYGERLK 514
++FMIQ +S+YG K
Sbjct: 147 RDFMIQGGDFEKGNGTGGKSVYGRTFK 173
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/60 (73%), Positives = 52/60 (86%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
FEDENF+ KH G G LSMANAG +TNGSQFFI TVKT WLDG+HVVFG+V+EG+DVV+ +
Sbjct: 90 FEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAI 149
Score = 58.0 bits (134), Expect = 6e-09
Identities = 35/87 (40%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FDM I G IV+ L+ P+T ENF L +G G +KGSKFHRVI
Sbjct: 5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVI 64
Query: 434 KNFMIQXXXXXXXXXXXXRSIYGERLK 514
NFM Q SIYG + +
Sbjct: 65 PNFMCQGGDFTAGNGTGGESIYGSKFE 91
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/60 (73%), Positives = 52/60 (86%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
FEDENF+ KH G G LSMANAG +TNGSQFFI TVKT WLDG+HVVFG+V+EG+DVV+ +
Sbjct: 91 FEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAI 150
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FDM IG G IV+ L+ PKT ENF L +G G +KGS FHRVI
Sbjct: 6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65
Query: 434 KNFMIQXXXXXXXXXXXXRSIYGERLK 514
NFM Q SIYG + +
Sbjct: 66 PNFMCQGGDFTKGNGTGGESIYGAKFE 92
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/60 (73%), Positives = 50/60 (83%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
FEDENF LKH G G LSMANAG +TNGSQFFI TVKT WLD +HVVFG+V+EGM +V+ L
Sbjct: 174 FEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTL 233
Score = 84.2 bits (199), Expect = 7e-17
Identities = 42/84 (50%), Positives = 53/84 (63%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 442
KVT+KV FD++IG + G IV+GLFG+ VPKT ENF L + GYKGS FHR+IK+F
Sbjct: 92 KVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDF 151
Query: 443 MIQXXXXXXXXXXXXRSIYGERLK 514
MIQ SIYG + +
Sbjct: 152 MIQGGDFTEGNGTGGISIYGAKFE 175
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
FEDENFKLKH G G LSMAN+G +TNGSQFFI T KT WLDG+HVVFGKV++G +VV+ +
Sbjct: 90 FEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAM 149
Score = 54.0 bits (124), Expect = 9e-08
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FD+ IG G +V+ LF P+T NF L G G YKGS FHR+I
Sbjct: 5 KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRII 64
Query: 434 KNFMIQXXXXXXXXXXXXRSIYGERLK 514
FM Q SIYG + +
Sbjct: 65 PGFMCQGGDFTRGNGTGGESIYGSKFE 91
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/60 (68%), Positives = 51/60 (85%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F+DENF KH GAG LSMAN+G +TNGSQFFI T KT WLDG+HVVFG+V++G+DVV+ +
Sbjct: 90 FKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAI 149
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/87 (39%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
+V FDM + IG I + LF T P T ENF L +G G +KGS FHRVI
Sbjct: 5 RVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVI 64
Query: 434 KNFMIQXXXXXXXXXXXXRSIYGERLK 514
FM Q SIYG + K
Sbjct: 65 PGFMCQGGDFTAKNGTGGESIYGAKFK 91
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 91.5 bits (217), Expect = 5e-19
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F+DENF KH G G LSMANAG +TNGSQFFI T KT WLDG+HVVFG+V+EG++VV+ +
Sbjct: 91 FKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDI 150
Score = 62.1 bits (144), Expect = 3e-10
Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FDM +G + G IV+ L+ T P+T ENF L G G YKGS FHRVI
Sbjct: 6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVI 65
Query: 434 KNFMIQXXXXXXXXXXXXRSIYGERLK 514
FM Q SIYG + K
Sbjct: 66 PKFMCQGGDFTAGNGTGGESIYGSKFK 92
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +1
Query: 505 TFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVV 678
TF DENFK++H AG ++MAN G D+NGSQFFITTVK WL+G HVV GKV++GMD V
Sbjct: 132 TFPDENFKIQHSHAGMVAMANTGPDSNGSQFFITTVKASWLEGEHVVLGKVIQGMDNV 189
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGE-------GYKGSKF 421
++T++V D+ I +G IVIGL+G VPKT ENF L +G+ YKG+ F
Sbjct: 44 EITNRVFLDVDIDGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYKGTPF 103
Query: 422 HRVIKNFMIQXXXXXXXXXXXXRSIYG 502
HR+I F+IQ SIYG
Sbjct: 104 HRIISGFVIQGGDIIHGDGKSSDSIYG 130
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F DENF+L H GAG LSMAN G +TNGSQFFI + P LDG+HVVFGKV+EGM V++K+
Sbjct: 94 FSDENFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVVFGKVVEGMAVIKKM 153
Score = 58.0 bits (134), Expect = 6e-09
Identities = 37/88 (42%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 418
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 419 FHRVIKNFMIQXXXXXXXXXXXXRSIYG 502
FHRVIK FM Q SIYG
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYG 91
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F DENF+L H GAG LSMAN G +TNGSQFFI + P LDG+HVVFGKV+EGM V++K+
Sbjct: 94 FSDENFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVVFGKVVEGMAVIKKM 153
Score = 58.0 bits (134), Expect = 6e-09
Identities = 37/88 (42%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 418
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 419 FHRVIKNFMIQXXXXXXXXXXXXRSIYG 502
FHRVIK FM Q SIYG
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYG 91
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 87.8 bits (208), Expect = 6e-18
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F+DENF+LKH G LSMAN+G +TNGSQFFITT +T LDG+HVVFG+V +GM VV+ +
Sbjct: 91 FDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSI 150
Score = 58.0 bits (134), Expect = 6e-09
Identities = 36/84 (42%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRV 430
K D+ IG + G IVI L+ VPKT ENF L +G G YKG++FHRV
Sbjct: 5 KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRV 64
Query: 431 IKNFMIQXXXXXXXXXXXXRSIYG 502
IK FMIQ SIYG
Sbjct: 65 IKGFMIQGGDISANDGTGGESIYG 88
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 85.4 bits (202), Expect = 3e-17
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Frame = +1
Query: 490 QYIW*T-FEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLE 663
Q IW FEDE K L+H LSMANAG +TNGSQFFITTV TPWLD +H VFG+V++
Sbjct: 539 QSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVK 598
Query: 664 GMDVVQ 681
GMDVVQ
Sbjct: 599 GMDVVQ 604
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 311 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
+G I + L+ + PKT ENF + Y FHRVI+ FMIQ
Sbjct: 484 LGDIHMKLYPEECPKTVENFTTHCRNGY---YDNHLFHRVIRGFMIQ 527
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/61 (63%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Frame = +1
Query: 508 FEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQK 684
FEDE N +LKH GAG LSMANAG +TNGSQFFIT P LDG+H +FG+V GM+V+++
Sbjct: 80 FEDEINKELKHTGAGILSMANAGPNTNGSQFFITLAPQPSLDGKHTIFGRVCRGMEVIKR 139
Query: 685 L 687
L
Sbjct: 140 L 140
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +2
Query: 302 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXX 481
+ ++G + ++ K P+T NF +L+++ Y FHR++K+F++Q
Sbjct: 15 ETSMGPFTVEMYYKHSPRTCRNFLELSRRGY---YDNVLFHRIVKDFIVQ-GGDPTGTGR 70
Query: 482 XXRSIYGERLK 514
SIYG + +
Sbjct: 71 GGESIYGSKFE 81
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 82.6 bits (195), Expect = 2e-16
Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL-EGMDVVQK 684
FEDENF KH G G LSMAN+G +TNG QFFIT K WLD +HVVFG+VL +G+ V++K
Sbjct: 116 FEDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVMRK 175
Query: 685 L 687
+
Sbjct: 176 I 176
Score = 54.4 bits (125), Expect = 7e-08
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +2
Query: 278 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQ---KPEGE--GYKGSKFHRVIKNF 442
V FD+ IG G I + LF PKT ENF Q + G+ GYK +FHRVIK+F
Sbjct: 34 VFFDVSIGGIPAGRIKMELFADIAPKTAENFRQFCTGELRKAGKPLGYKECQFHRVIKDF 93
Query: 443 MIQXXXXXXXXXXXXRSIYGERLK 514
M+Q SIYG + +
Sbjct: 94 MVQSGDFLKNDGSGCMSIYGHKFE 117
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +1
Query: 508 FEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVV 678
F DE LKH G LSMAN+G +TNGSQFFIT K P L+G + +FGKV+ G +V+
Sbjct: 71 FNDEIRDSLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGKVIHGFEVL 128
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/48 (45%), Positives = 26/48 (54%)
Frame = +2
Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
N+G I +F VPK+ ENF L Y G+ FHR IK FMIQ
Sbjct: 8 NLGDIKCEIFCDEVPKSAENFLALCASGY---YDGTIFHRNIKGFMIQ 52
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +1
Query: 508 FEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 669
F+DE N KL H G G +SMAN+G TNGSQFF+ L+ +H VFG V+ G+
Sbjct: 414 FKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGL 468
Score = 35.5 bits (78), Expect = 0.034
Identities = 25/66 (37%), Positives = 30/66 (45%)
Frame = +2
Query: 254 QGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 433
+ PK V F GD NI L P+ ENF L ++ Y G FHR I
Sbjct: 338 KNPKKKGYVQFQTTHGDLNIE-----LHCDIAPRACENFITLCERGY---YNGVAFHRSI 389
Query: 434 KNFMIQ 451
+NFMIQ
Sbjct: 390 RNFMIQ 395
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +1
Query: 508 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
F DE+ KL+H G LSM+ A +D GS F IT LD +VVFGK+++G ++++K+
Sbjct: 94 FPDESPKLRHEETGLLSMSIADRDKFGSHFHITFRPNQQLDRNNVVFGKLIQGKEILKKI 153
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Frame = +2
Query: 263 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 418
K +V D+ I D T+V LF + PKT+ENF L +G G YKGS
Sbjct: 4 KKNPQVFMDVSIDGDPAETMVFELFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSF 63
Query: 419 FHRVIKNFMIQXXXXXXXXXXXXRSIY 499
FHR++K Q SIY
Sbjct: 64 FHRIMKGSSAQAGDFVNRNGTAGESIY 90
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 508 FEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKT-PWLDGRHVVFGKVLEGMDVVQ 681
++DE + LKH G ++MA+ G++ N SQF+ T +LDG+H VFG++ EG D +
Sbjct: 78 YKDEIHLDLKHSKTGTVAMASGGENLNASQFYFTLRDDLDYLDGKHTVFGQIAEGFDTLT 137
Query: 682 KL 687
++
Sbjct: 138 RI 139
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 308 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
++G IVI L P T +NF +L + + Y G FH V K+F Q
Sbjct: 8 SLGDIVIDLHSDKCPLTCKNFLKLCKI---KYYNGCLFHTVQKDFTAQ 52
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +1
Query: 508 FEDE-NFKLKHYGAGWLSMANAGK-DTNGSQFFITTVKTPWLDGRHVVFGKV 657
F DE + +L+ G ++MANA ++NGSQFF T K WLD +H +FGKV
Sbjct: 83 FADEFHSRLRFSHRGIVAMANASSPNSNGSQFFFTLDKCDWLDKKHTIFGKV 134
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQ 451
G I + L+ K PK+ NF QL EGY + FHRVI F++Q
Sbjct: 22 GPIDVELWPKEAPKSVRNFVQLCL----EGYFDNTIFHRVIPGFLVQ 64
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +1
Query: 583 NGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKLR 690
NG++F IT V +P L+ +V GKVLEGM VV+K+R
Sbjct: 230 NGTEFVITAVDSPELEDSVLVIGKVLEGMGVVEKMR 265
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 269 THKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 445
T K D+ I + IG I+IGL+G VP T F + G Y+ F +++ ++
Sbjct: 91 TKKAFIDVSIDGEPIGRIIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYV 149
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +1
Query: 511 EDENFKLKHY-GAGWLSMANAGKDTNGSQFFITTVKTPW-LDGRHVVFGKVLEGMDVVQK 684
+DE F L H G G +SMA D+NGSQF I +DG HVV GKV+EG+D+++
Sbjct: 87 DDEYFILNHEDGPGIISMA----DSNGSQFQIHMKDYGLQVDGDHVVIGKVVEGLDLMRN 142
Query: 685 L 687
+
Sbjct: 143 I 143
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 275 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 433
KV FD+ + G IVI LF P+T ENF L G G YKGS F ++
Sbjct: 5 KVFFDLTVDGKPAGRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIV 64
Query: 434 KNFM 445
+ M
Sbjct: 65 PDLM 68
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 592 QFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
+ ITT P L+ + +VFG+VL+G DVVQ++
Sbjct: 179 ELLITTAPIPDLNDQLIVFGRVLKGEDVVQEI 210
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 592 QFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
+ ITT P L+ + +VFG+VL+G DVVQ++
Sbjct: 179 ELLITTAPIPDLNDQLIVFGRVLKGEDVVQEI 210
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 314 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 451
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 592 QFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
+ ITT P L+ + +VFG+VL+G DVVQ++
Sbjct: 179 ELLITTAPIPDLNDQLIVFGRVLKGEDVVQEI 210
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 577 DTNGSQFFITTVK--TPWLDGRHVVFGKVLEGMDVVQKL 687
D +F ITT +P LDG ++VFG VLEG+DVV +
Sbjct: 191 DYRNVEFLITTGPGPSPQLDGGNIVFGTVLEGLDVVTSI 229
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 311 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRV 430
+G +V+GL+G+ VP T F ++ YK + H++
Sbjct: 85 LGRVVLGLYGRHVPITVSTFKRMCTS-SSTSYKNTPVHKI 123
>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 230
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 302 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQ 451
D G++ I LF T P + F + Q +GY KG F RV+K+F+IQ
Sbjct: 83 DTGKGSVTIELFKDTAPNVVDQFMKFCQ----DGYFKGFLFSRVVKHFVIQ 129
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 568 AGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKL 687
A + G +FFI + + L+ + VFG+V +G DVVQ++
Sbjct: 165 AKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEI 204
>At1g35240.1 68414.m04370 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362: B3 DNA
binding domain
Length = 615
Score = 28.3 bits (60), Expect = 5.1
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Frame = -1
Query: 514 LQTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPLRFLS*LKEVLSCLR----Y 347
L +YT SSS L I T EI SV A + LR+ ++ ++ R Y
Sbjct: 379 LNILVLYTCSSSSHILPPILTQGQEIGQLSV--ASPMNTSLRYRDTTEDAMNPSRLLMSY 436
Query: 346 SLSK*SNHNSTNIVITNL--HVKAHLMSNFRSLGISSDLALAMNNKI 212
+ N N ++T + ++ ++NFR G+S + L + + I
Sbjct: 437 PVQPMPKLNYNNQMVTQIEENITTKAVTNFRLFGVSLAIPLVIKDPI 483
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,703
Number of Sequences: 28952
Number of extensions: 292468
Number of successful extensions: 626
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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