Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20840
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 112 5e-26
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 83 4e-17
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 77 3e-15
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 68 1e-12
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 68 1e-12
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 54 1e-08
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 50 4e-07
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 45 1e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 0.001
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 29 0.82
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 112 bits (269), Expect = 5e-26
Identities = 64/132 (48%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Frame = +1
Query: 280 KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 459
+GPKVT V FD++ GD+ +G + IGLFGKTVPKT ENF LA +G GY+GS FHRVI
Sbjct: 21 RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80
Query: 460 KNFMIQGGDFTKGDGTEGAVYMVNVLKMKTSS*STMVLVGYLWLMQAKTQMD-LNFSSQL 636
NFMIQGGD TKGDGT G + + S G L + A + F
Sbjct: 81 PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQ-RPGLLSMANAGPDSNGSQFFITT 139
Query: 637 LRHPGLDGRHVV 672
++ P LDG HVV
Sbjct: 140 VKTPWLDGHHVV 151
Score = 85.4 bits (202), Expect = 7e-18
Identities = 39/56 (69%), Positives = 42/56 (75%)
Frame = +3
Query: 510 GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
G+SIYG RF DENFKL H G LSMANAG D+NGSQFFITTVKTPW+ FG
Sbjct: 98 GKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFG 153
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 83.0 bits (196), Expect = 4e-17
Identities = 40/64 (62%), Positives = 46/64 (71%)
Frame = +3
Query: 486 FYQG*WN*GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQT 665
F +G G+SIYGE+F DENF LKH G LSMANAG +TNGSQFFITTV TPW+ +
Sbjct: 65 FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKH 124
Query: 666 CCFG 677
FG
Sbjct: 125 VVFG 128
Score = 75.8 bits (178), Expect = 5e-15
Identities = 36/68 (52%), Positives = 42/68 (61%)
Frame = +1
Query: 310 FDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQGGDF 489
FD+ +G IV LF VPKT NF L +G GY GS FHRVI FM+QGGDF
Sbjct: 6 FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65
Query: 490 TKGDGTEG 513
T+G+GT G
Sbjct: 66 TRGNGTGG 73
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 76.6 bits (180), Expect = 3e-15
Identities = 39/64 (60%), Positives = 45/64 (70%)
Frame = +3
Query: 486 FYQG*WN*GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQT 665
F +G G SIYGE+FEDENF+LKH LSMANAG +TNGSQFFITTV TP + +
Sbjct: 70 FTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKH 129
Query: 666 CCFG 677
FG
Sbjct: 130 VVFG 133
Score = 74.9 bits (176), Expect = 9e-15
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG----YKGSKFHRVIKNF 468
K+S D KI TI LF VPKT +NF L E +G YKGS+FHRVIKNF
Sbjct: 8 KISIDGKIQP----TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNF 63
Query: 469 MIQGGDFTKGDGTEG 513
M+QGGDFT+G+GT G
Sbjct: 64 MLQGGDFTRGNGTGG 78
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 68.1 bits (159), Expect = 1e-12
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 GRSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
G SIYG++F+DE + L H GAG LSMANAG +TN SQFFIT TPW+ + FG
Sbjct: 64 GTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFG 120
Score = 54.0 bits (124), Expect = 2e-08
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = +1
Query: 334 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQGGDFTKGDGTEG 513
++G I+I L+ + PKT +NF+ LA+ EG Y G FHRVI +F+IQGGD T G G G
Sbjct: 9 SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQGGDPT-GTGRGG 64
Query: 514 AVYMVNVLKMKTSS*STMVLVGYLWLMQAKTQMDLN-FSSQLLRHPGLDGRHVV 672
+ + S G L + A + + F L P LDG+H +
Sbjct: 65 TSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTI 118
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 67.7 bits (158), Expect = 1e-12
Identities = 40/79 (50%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Frame = +1
Query: 304 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA--------QKPEGEGYKGSKFHRVI 459
V D+ I +G I I LF VPKT ENF Q QKP G YK S FHR+I
Sbjct: 7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64
Query: 460 KNFMIQGGDFTKGDGTEGA 516
+ FMIQGGDF GDGT A
Sbjct: 65 QGFMIQGGDFVSGDGTGSA 83
Score = 60.1 bits (139), Expect = 3e-10
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +3
Query: 516 SIYGER-FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
+I+ R F DENF LKH G LSMANAGKD+NG QFFITTV ++ + FG
Sbjct: 84 TIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFG 138
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +3
Query: 510 GRSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWV 653
G SI+ + FEDE + LKH +SMAN+G +TNGSQFFITT TPW+
Sbjct: 517 GESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWL 565
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/58 (50%), Positives = 34/58 (58%)
Frame = +1
Query: 340 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQGGDFTKGDGTEG 513
G I I L+ + PK +NF A E Y + FHR+IKNFMIQGGD GDGT G
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQGGD-PLGDGTGG 517
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/41 (60%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 GRSIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFI 629
G+SI+G+ F+DE LKH G +SMAN GK+TNGSQFFI
Sbjct: 338 GQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFI 378
Score = 38.7 bits (86), Expect = 8e-04
Identities = 26/60 (43%), Positives = 30/60 (50%)
Frame = +1
Query: 334 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQGGDFTKGDGTEG 513
N G I I L P NF QLA++ Y+ + FHR I FMIQGGD G G G
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQGGD-PSGTGRGG 338
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 44.8 bits (101), Expect = 1e-05
Identities = 29/58 (50%), Positives = 33/58 (56%)
Frame = +1
Query: 340 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQGGDFTKGDGTEG 513
G I I L+ K VPK NF QL EG Y G+ HRV+ F+IQGGD T G G G
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPT-GTGMGG 75
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 510 GRSIYGERFEDENF-KLKHYGAGWLSMANAGKDTNGSQFFITTVKTP-WVRWQT 665
G SIYGE F E +L+ G + MA + N SQFFIT TP W QT
Sbjct: 75 GESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQT 128
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +1
Query: 328 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQGGDFTKGDGT 507
+ +G +VI LF K PKT ENF +L + + Y F+ + N+ Q GD G
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLCKL---KYYNFCPFYNIQHNYTCQTGD-PLGPTG 61
Query: 508 EGAVYMVNVLKMKT 549
+G + NVL T
Sbjct: 62 DGGRCVWNVLNKGT 75
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.7 bits (61), Expect = 0.82
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 133 IVNFEKINIRNEFCKNSKETN*TRFNHGY--PYNGFRNFVVHRSAKSDEIPKGPKVTHKV 306
+++ E +N ++F N K+ + N G YN RNF+ R + EI +
Sbjct: 492 VISLELLNFFSQFKCNKKDYSFVA-NLGSLKMYNDDRNFLYPRETSNKEIETTSPSIFTL 550
Query: 307 SFDMKIGDDN 336
SF+ DDN
Sbjct: 551 SFERSSSDDN 560
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 199 FSSFPCYFYKIRFECLFFQNLRY 131
FSSF F+++ F C FF L Y
Sbjct: 11 FSSFESLFFRLFFVCSFFFPLLY 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,002
Number of Sequences: 5004
Number of extensions: 57128
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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