Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20840
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   7e-21
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   1e-16
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               82   4e-16
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         62   3e-10
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         60   2e-09
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         51   7e-07
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         48   9e-06
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          45   7e-05
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.070
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.49 
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   29   3.5  
SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  103 bits (248), Expect = 1e-22
 Identities = 46/64 (71%), Positives = 53/64 (82%)
 Frame = +3

Query: 486 FYQG*WN*GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQT 665
           F +G    G+SIYG++F DENFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPW+  + 
Sbjct: 108 FTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 167

Query: 666 CCFG 677
             FG
Sbjct: 168 VVFG 171



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 59/153 (38%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
 Frame = +1

Query: 280 KGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPKTTENFFQL----- 405
           K P VT KV FD+ IG +  G I IGLF              +++  T   +F       
Sbjct: 21  KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCT 80

Query: 406 AQKPEGEGYKGSKFHRVIKNFMIQGGDFTKGDGTEGAVYMVNVLKMKTSS*S-TMVLVGY 582
            +  +G GYK S FHRVI++FMIQGGDFTKGDGT G     ++   K +  +  +   G 
Sbjct: 81  IESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGK----SIYGQKFADENFKLQHYGA 136

Query: 583 LWLMQAKTQMDLN---FSSQLLRHPGLDGRHVV 672
            WL  A    D N   F    ++ P LDGRHVV
Sbjct: 137 GWLSMANAGKDTNGSQFFITTVKTPWLDGRHVV 169


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 46/74 (62%), Positives = 51/74 (68%)
 Frame = +1

Query: 292 VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 471
           VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +G GYK S FHRVIKNFM
Sbjct: 24  VTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFM 83

Query: 472 IQGGDFTKGDGTEG 513
           IQGGDFT  DGT G
Sbjct: 84  IQGGDFTNKDGTGG 97



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 39/56 (69%), Positives = 45/56 (80%)
 Frame = +3

Query: 510 GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           G SIYG+ F+DENF LKHYG GWL MANAGK+TNGSQF+ITT+KT W+     CFG
Sbjct: 97  GYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFG 152


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 43/76 (56%), Positives = 49/76 (64%)
 Frame = +1

Query: 286 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 465
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 466 FMIQGGDFTKGDGTEG 513
           FM QGGDFT+GDGT G
Sbjct: 59  FMCQGGDFTRGDGTGG 74



 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 37/64 (57%), Positives = 43/64 (67%)
 Frame = +3

Query: 486 FYQG*WN*GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQT 665
           F +G    G+SIYG +F DENF LKH G G LSMANAG  TNGSQFF+ T KT W+  + 
Sbjct: 66  FTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKH 125

Query: 666 CCFG 677
             FG
Sbjct: 126 VVFG 129


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 37/56 (66%), Positives = 44/56 (78%)
 Frame = +3

Query: 510 GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           G+SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT W+  +   FG
Sbjct: 208 GKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFG 263



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 39/75 (52%), Positives = 48/75 (64%)
 Frame = +1

Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 468
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 469 MIQGGDFTKGDGTEG 513
           M QGGDFTK +GT G
Sbjct: 194 MCQGGDFTKHNGTGG 208


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/56 (48%), Positives = 35/56 (62%)
 Frame = +3

Query: 510 GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           G S+YG  FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+  +   FG
Sbjct: 49  GESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFG 104


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
 Frame = +3

Query: 510 GRSIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           G SI+G  FEDE  + L+H     +SMANAG +TNGSQFFIT V TPW+  +   FG
Sbjct: 6   GESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFG 62


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +3

Query: 585 MANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           MANAGKDTNGSQFFITTVKT W+  +   FG
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFG 31


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 26/43 (60%), Positives = 28/43 (65%)
 Frame = +3

Query: 510 GRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV 638
           G SIYG  F DE F+ KH     LSMAN G +TNGSQFFI  V
Sbjct: 29  GESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 23/40 (57%), Positives = 28/40 (70%)
 Frame = +3

Query: 558 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           +H   G LSMAN+G +TNGSQFFITTV TP +  +   FG
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFG 227


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +3

Query: 579 LSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           LSMANAG  TNGSQFF+ T KT W+  +   FG
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFG 35


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 24/52 (46%), Positives = 30/52 (57%)
 Frame = +1

Query: 334 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQGGDF 489
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+QGG F
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGF 79


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 528 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWVRWQTCCFG 677
           E  +DE   L     H   G +SMAN G ++NGSQFFI   K P +  +   FG
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 334 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 462
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +1

Query: 340 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 453
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 671 TTCLPSNPGCLNSCDEKLRSICVFACISHR*PTSTI 564
           TT  P  P C  +CD++    C  AC     PT T+
Sbjct: 872 TTLAPPPPACPATCDQQCYPQCAPACCDTATPTITL 907


>SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +1

Query: 244 VVHRSAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEG 423
           V+ R+ K   + +G   + ++S  +K  D+ I  I+   F + +    ENFF L +KP  
Sbjct: 52  VISRNEKEKVLIEGSINSMRISIAVKQADE-IEKILCKKFMRFMMMRAENFFVLRRKPV- 109

Query: 424 EGY 432
           EGY
Sbjct: 110 EGY 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,937,211
Number of Sequences: 59808
Number of extensions: 387318
Number of successful extensions: 666
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)