Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20839
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                29   2.7  
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)                  29   4.7  

>SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 295

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
 Frame = +3

Query: 132 STITTRRMQTIRYLSVMVFRTLSCLIRLLSNHLKHNIKCILQLFIFQKXXXXXXXXXXXC 311
           S +   + QT++Y   + F  L CLI L  N  KH    ++    + +            
Sbjct: 134 SPVLQAKRQTMQYTMSIFFADLCCLIFLTENKNKHGTTVMVSRPWYHRHGTTVMVSPSWY 193

Query: 312 NYLPTLVLQSPL*LHR--FIVLTADGWLH 392
           +     V+ SP   HR    V+ +  W H
Sbjct: 194 HRHGITVMVSPSWYHRHGITVMVSPSWYH 222


>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
          Length = 335

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 545 NNINIIVLWDC*LKTKPITFYAKINTTLTNLASLKNLN--TVNNSALNE 685
           NNI +I   D   K K +T Y    T + N+ SL NL+  ++ N++L +
Sbjct: 97  NNIEVIEGLDKLTKLKDLTLYNNRITKIENMDSLTNLHVFSIGNNSLKQ 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,393
Number of Sequences: 59808
Number of extensions: 336507
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)