Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20839
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF106575-3|AAC78173.2|  287|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical
           protein Y32G9B.1 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 438 VSRSFKFCLPVNGIRDATNHPPLER*NDAIITGSAEQALANNYIK 304
           + R+ K C  V+G+ D +    L + N+ +ITG   Q   NN++K
Sbjct: 349 LQRAMKRCEEVSGMMDQSPAAVLGQLNN-LITGEVAQGFLNNFLK 392


>AF106575-3|AAC78173.2|  287|Caenorhabditis elegans Hypothetical
           protein K04F1.14a protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 473 SALMFHRNFSKSI*TFQGIL*FTK--NNINIIVLWDC*LKTKPITFYAKINTTLTNLASL 646
           S+L F+RN ++     +G+L  ++  +  ++  L +    T  +  Y   NT L NL+  
Sbjct: 63  SSLPFYRNCTRITGGLRGVLKISEVSDQTDLSALSNLKSITGNLEVY---NTELQNLSFF 119

Query: 647 KNLNTVNNSALNE 685
           KNL T+N     E
Sbjct: 120 KNLQTINGQLFQE 132


>AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical
           protein K04F1.14b protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 473 SALMFHRNFSKSI*TFQGIL*FTK--NNINIIVLWDC*LKTKPITFYAKINTTLTNLASL 646
           S+L F+RN ++     +G+L  ++  +  ++  L +    T  +  Y   NT L NL+  
Sbjct: 178 SSLPFYRNCTRITGGLRGVLKISEVSDQTDLSALSNLKSITGNLEVY---NTELQNLSFF 234

Query: 647 KNLNTVNNSALNE 685
           KNL T+N     E
Sbjct: 235 KNLQTINGQLFQE 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,532
Number of Sequences: 27780
Number of extensions: 271283
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)