Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20837
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    29   0.53 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.1  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   3.7  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.7  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   3.7  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.7  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   4.9  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   4.9  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   6.5  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   6.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   6.5  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   8.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.6  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   8.6  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 22/105 (20%), Positives = 53/105 (50%)
 Frame = +2

Query: 68  KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 247
           K P +E  P   V  L+ +   I    +I +++ +  ++  +V++ P + ++ +I+ +  
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435

Query: 248 SD*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 382
           +    +   +KM K+  L      P PR++ +T+H+I +  ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 554  LLYLSAEIFLEMLQAAWSSLICSVRAY---HFPIPSDTS 447
            L  L AEI LE LQ +W  L C   A    HF I  D+S
Sbjct: 3894 LFSLDAEISLEKLQNSWKRL-CQKNAILRTHFAISEDSS 3931


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 295 RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 423
           +P  D RN GP Q  + + + PE H ++  E+ +  + ++ N  E
Sbjct: 151 KPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 328 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 414
           P +++  T++ E HED +  V  +++D N
Sbjct: 24  PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 591 TIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 707
           TI +PS++E+  ++  +        +ETN NS L + SE
Sbjct: 168 TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 317 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 424
           +P P S+    HR LN  K+    F P  +  T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 26/107 (24%), Positives = 44/107 (41%)
 Frame = +2

Query: 68  KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 247
           ++ E E     V+D    E+EL      +K  +N ++    E+   P +   +  K    
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704

Query: 248 SD*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 388
           S     K +  + K +      E+P  R+ K TK+  L+  K  KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 21/85 (24%), Positives = 41/85 (48%)
 Frame = +2

Query: 26  NYIRARRTRSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDI 205
           NYI+ R     + D++ + + +    +D +  E+E    A TIKD   SL +N   ++  
Sbjct: 42  NYIQKR-----VQDELKQLQLRQKKAIDAIQ-EEEWKSNAKTIKDSQGSLDSN---LLSA 92

Query: 206 PVKVIVEEIKPSLKSD*KTLKCRMK 280
             +   E+++     + K LK ++K
Sbjct: 93  EFRSFQEKLEKQSSINDKELKIKLK 117


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = +2

Query: 98  NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 232
           NVVD+LS EQE        L DQ N   +  NSLR+       +P  + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +1

Query: 325 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 492
           PP H ++ TQ    HEDA+    S  + +    I  R  ++      G +    EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +1

Query: 295 RPLVDLRNPGPPQHQEHE--TQNPEHHEDAEKIVSSVKNDI---NTAEIALRQGFQEVSD 459
           RPL++LR P P    E +   +N ++    + I+ S +      N+    ++ GF++ ++
Sbjct: 597 RPLINLRQPKPLLRSEADCIIKNLQNFSTDDLIIKSNEKFTAAKNSLINVIKSGFEQ-NE 655

Query: 460 GIGKWYARTEQINELQAAC 516
            I  ++ +T  +  L   C
Sbjct: 656 FINPYFLQTNYLKNLLCCC 674


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 116 SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD 253
           S+ +EL+D+    KD+    +A K EV+D+ VK   E+++   KS+
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKSN 509


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 376 AEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKK 531
           A K  S+ + D N +EI   +  +       +W + TEQ+ ELQ +C  S +
Sbjct: 556 ALKFSSNDQKDDNVSEIPT-ESLEYKKLRCLRWKSLTEQVVELQPSCKSSSQ 606


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 320 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 463
           P   +  + K  I   +K++  + LP+ +T  Q K LFVK+   C+ V
Sbjct: 39  PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,589
Number of Sequences: 5004
Number of extensions: 48394
Number of successful extensions: 211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)