Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20837
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical
           protein C46A5.6 protein.
          Length = 316

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 431 FVK-ASRKCQTVLENGTLVPSKLTSSRQLATFPRKFRRSDTKV 556
           F+K A R+  TVLE  T  P+K T   QL+   RKF+R+DT+V
Sbjct: 66  FLKVAKRRSSTVLETAT--PAK-TPKIQLSERRRKFQRNDTEV 105


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 322 GPPQHQEHETQNPEHHEDAEKIVSSVKN 405
           GPP HQ+H  Q  +H+  A    SS  N
Sbjct: 133 GPPVHQQHYQQQQQHYGAATSAPSSSYN 160


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 292 KRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 438
           +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 378 QRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 594 IAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEG 710
           +  PS + T+NK     I+   + L +NFN+G+  +S G
Sbjct: 215 VVLPSRKSTRNKKDMNQIKED-EELVSNFNNGIGVISRG 252


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 292 KRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 438
           +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 378 QRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
           protein R10F2.6 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 331 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQA 510
           +HQ+HE Q  +  E+AEK +  +K D+   EI  +     V + + K   R E      A
Sbjct: 567 EHQKHEDQT-DKSEEAEKKM-KIKADLAAKEIWDKNMEHNVDEILMKRVNRVEMCRIQMA 624

Query: 511 ACNISKKI 534
             N+ +K+
Sbjct: 625 LQNLDQKL 632


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,287
Number of Sequences: 27780
Number of extensions: 276860
Number of successful extensions: 1199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)