Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20837
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi...    32   0.46 
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    31   0.61 
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    31   0.81 
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    31   0.81 
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr...    29   3.3  
At1g12380.1 68414.m01431 expressed protein                             29   4.3  
At3g61390.2 68416.m06872 U-box domain-containing protein several...    28   5.7  
At2g40435.1 68415.m04988 expressed protein                             28   7.5  
At2g28590.1 68415.m03474 protein kinase family protein contains ...    28   7.5  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    28   7.5  
At5g48310.1 68418.m05968 expressed protein                             27   9.9  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    27   9.9  
At3g14490.1 68416.m01835 terpene synthase/cyclase family protein...    27   9.9  
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ...    27   9.9  
At1g11670.1 68414.m01340 MATE efflux family protein similar to r...    27   9.9  

>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 534

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -2

Query: 279 FIRHFNVF*SLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLD--KLS 106
           F+R  +++  +   G+I ST+T   M +  F    RL     MV +     CS D    S
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430

Query: 105 TTFKGLSSASGTLSGMEL 52
           T  KG   A     G+EL
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448


>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 349 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 486
           T  P HH D  + VS +K+++ T   + ++ FQ V D  G+W  RT
Sbjct: 20  TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 310 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 465
           L  P      +   Q P+H E+ E +++ +KND        R G  ++S  +
Sbjct: 64  LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 506 WSSLICSVRAYHFPIPSDTSW 444
           WS+   S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120


>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GI:3757520
           from [Arabidopsis thaliana]
          Length = 226

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/96 (22%), Positives = 48/96 (50%)
 Frame = +2

Query: 62  PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 241
           P + P+  DK   + D +    +  D+A  +KD+++SL+   KE+ D   K  + + K  
Sbjct: 95  PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151

Query: 242 LKSD*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 349
           LK + + +  ++K  K++       +P P+++   +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +1

Query: 298 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 477
           PL  +R+         +  +PE  +D +K+++ + +  + A IAL +  +  ++G+   Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667

Query: 478 ARTEQINE 501
           AR  Q+ E
Sbjct: 668 ARAVQMKE 675


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/58 (18%), Positives = 23/58 (39%)
 Frame = +1

Query: 331 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINEL 504
           + +E E     H E  +  +  + +DI         GF    + I +W+ R  + + +
Sbjct: 339 KREEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPM 396


>At2g40435.1 68415.m04988 expressed protein
          Length = 158

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +3

Query: 546 IQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVA 725
           IQKL + +       T    S E T  K    T+E+  K    N  SG NQ    + ++ 
Sbjct: 40  IQKLKQKVERFNQDPTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLE 99

Query: 726 TFKADG 743
            F+  G
Sbjct: 100 AFEDIG 105


>At2g28590.1 68415.m03474 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 424

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 329 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSR 508
           R+ KS K     TTK     F P K+T+   +    + S  C  V   G +    +T   
Sbjct: 6   RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63

Query: 509 QLA 517
           QLA
Sbjct: 64  QLA 66


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +2

Query: 101 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD*KTLKCRMK 280
           V + +++ +E + QA+T +D    LRA    V+D   K+I E+       + +    R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592

Query: 281 MRKS 292
           ++KS
Sbjct: 593 LKKS 596


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 642 TIESGLKSLETNFNSGLNQLSEGIQIVAT 728
           T+    KSL+ NF SGL  +S  +Q+ AT
Sbjct: 636 TVFENYKSLDENFPSGLADISCPVQVSAT 664


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 391 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQA 510
           + +++D+      LR+G + + D +  W A  E  NE  A
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDA 497


>At3g14490.1 68416.m01835 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 601

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +1

Query: 388 VSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKKISALRYKS*MKR 567
           V  +KNDINT E  + +G  EV+ G+   Y +   +++ +A   ++ KI +  YK  M+ 
Sbjct: 492 VFRIKNDINTFEQEMSRG--EVAKGL-NCYMKQHGVSKEEAIGEMN-KIYSNYYKIIMEE 547

Query: 568 YI 573
           Y+
Sbjct: 548 YL 549


>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 602

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 677 ICL*RLETRFDCFKRSFILRF 615
           IC  R +TRFDC K  F+L F
Sbjct: 445 ICKVRSQTRFDCGKCDFVLCF 465


>At1g11670.1 68414.m01340 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; EST gb|W43487
           comes from this gene
          Length = 503

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -2

Query: 207 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSG 61
           GMSM + +FA RL SM L   +   S  ++  L     G+ SA  TL G
Sbjct: 70  GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCG 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,387
Number of Sequences: 28952
Number of extensions: 252053
Number of successful extensions: 959
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)