Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20836
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    29   0.87 
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     29   0.87 
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.1  

>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 616 LLRSTFYNTFLSLFFLIIYLKRQINSTVRLSIHYHTHRE 500
           L  S FY   ++   ++ Y+K+ +  T +L++  H H E
Sbjct: 215 LYNSYFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHNHVE 253


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -3

Query: 619 RLLRSTFYNTFLSLFFLIIYLKRQINSTVRLSIHY 515
           R+  STFY  F SLF   I L R IN  + L+I+Y
Sbjct: 226 RVSSSTFY-FFNSLFAYFIILLRIINEVILLAINY 259


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 332 YRPACAFKRVAYTAILSLFVCTIRVMSFEFVYN 234
           Y+P+CA   V Y +I  LF  +  +  +E + N
Sbjct: 255 YKPSCAVTDVLYLSIKGLFSSSTCLELYELIRN 287


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 70  IPGKLCVKHFSAYVPWGGKENAVQNIEVCCALPISCRIRHE 192
           IP +L  K F+  +P+G ++   +NI     +PI   I ++
Sbjct: 460 IPERLLCKRFNVALPYGQEKQKRKNISSIENVPIIAEIENK 500


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 619 RLLRSTFYNTFLSLFFLIIYLKRQINSTV 533
           ++L S  Y T LSLFFL  YL   + ST+
Sbjct: 558 KILLSLLYLTDLSLFFLDTYLWYILISTI 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,557
Number of Sequences: 5004
Number of extensions: 58198
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)